Factsheet for VIT_05s0094g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00550.t01	Wine grape	cytosol	66.85	92.72
VIT_05s0094g00730.t01	Wine grape	plastid	91.99	91.99
VIT_05s0094g00740.t01	Wine grape	plastid	81.77	82.91
VIT_05s0094g00650.t01	Wine grape	plastid	84.81	76.18
VIT_02s0012g02500.t01	Wine grape	cytosol	14.09	75.0
VIT_00s0499g00030.t01	Wine grape	plastid	78.45	72.26
VIT_05s0094g00750.t01	Wine grape	plastid	64.36	72.14
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	12.15	72.13
VIT_12s0034g00180.t01	Wine grape	cytosol	19.89	67.92
AT3G02630.1	Thale cress	plastid	72.38	66.16
Bra021427.1-P	Field mustard	plastid	71.82	65.82
CDX74242	Canola	plastid	71.82	65.66
Bra001057.1-P	Field mustard	plastid	71.82	65.66
CDX92006	Canola	plastid	71.55	65.4
CDX69459	Canola	plastid	70.99	64.74
Bra008631.1-P	Field mustard	plastid	70.99	64.74
CDY26510	Canola	plastid	70.72	64.48
AT5G16240.1	Thale cress	plastid	70.17	64.47
CDY34739	Canola	plastid	48.34	64.34
VIT_05s0094g00630.t01	Wine grape	plastid	29.28	63.1
VIT_10s0003g04810.t01	Wine grape	cytosol	20.44	61.67
VIT_18s0001g15460.t01	Wine grape	plastid	66.02	61.44
VIT_12s0034g00190.t01	Wine grape	extracellular	27.62	59.88
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	34.53	46.82

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:100266359	wikigene:100266359	EntrezGene:100267952	wikigene:100267952	MapMan:5.1.7.1
EMBL:AM440313	ProteinID:CAN60747	ProteinID:CAN60747.1	ProteinID:CBI24682	ProteinID:CBI24682.3	UniProt:D7T2F1
InterPro:FADS-2_CS	EMBL:FN595507	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114
InterPro:IPR012348	EntrezGene:LOC100266359	wikigene:LOC100266359	EntrezGene:LOC100267952	wikigene:LOC100267952	PFAM:PF03405
PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF9	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI00015CB514	ArrayExpress:VIT_05s0094g00580	EnsemblPlantsGene:VIT_05s0094g00580	EnsemblPlants:VIT_05s0094g00580.t01	unigene:Vvi.25423	RefSeq:XP_002274083
RefSeq:XP_002274083.1	RefSeq:XP_003632097	RefSeq:XP_003632097.1	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:D7T2F1]

Coordinates

chr5:+:23911590..23913015

Molecular Weight (calculated)

41442.3 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.531

Length

362 amino acids

Sequence
(BLAST)

001: MASMHRSVSR EIKNTKKISS SPRKVQVTHS MPPHKIEIFK SMENWVEENV LIHLKPVEKC WQPQDFLPDP ASDGFHERVK ELQDRAKGTP DDYFVVLVGH
101: MITEEALPTY QTQINITDGI RDETGASPSS WATWTRAWTA EENRHGDLLN KYLYLSGRVD MKQIEKTIQY LIGAGMDAQN DNSPYLGCIY TSFQERATFI
201: SHGSTARLAN QHGDKSLAQI CGIIASDEKR HETAYTKIVE KLFEIDPNGT VLAFADRMRK KITMPGFLMY DGCDENLFEH FSAVAQRLGV YTAKDYVDVL
301: EFFVERWNVE KLTGLSSEGR KAQDYVCGLA QRLRKLEERA QEKAKQAPTI PFSWILDREV RL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.