CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021427.1-P	Field mustard	plastid	99.63	68.61
CDX74242	Canola	plastid	94.85	65.15
AT3G02630.1	Thale cress	plastid	94.49	64.9
CDX92006	Canola	plastid	94.49	64.9
CDX69459	Canola	plastid	85.66	58.69
CDY26510	Canola	plastid	85.29	58.44
CDY17916	Canola	plastid	76.84	52.38
CDX79807	Canola	plastid	77.21	52.37
CDX83464	Canola	plastid	76.47	52.26
CDY44250	Canola	plastid	76.47	52.13
VIT_05s0094g00730.t01	Wine grape	plastid	66.91	50.28
VIT_05s0094g00580.t01	Wine grape	plastid	64.34	48.34
VIT_05s0094g00550.t01	Wine grape	cytosol	43.38	45.21
CDX69460	Canola	plastid	66.91	45.16
CDY26509	Canola	plastid	66.18	44.66
CDY57537	Canola	plastid	65.44	43.52
CDY43232	Canola	plastid	65.07	43.28
GSMUA_Achr5P25180_001	Banana	cytosol	25.74	42.42
VIT_05s0094g00630.t01	Wine grape	plastid	26.1	42.26
VIT_05s0094g00740.t01	Wine grape	plastid	55.15	42.02
VIT_05s0094g00650.t01	Wine grape	plastid	55.88	37.72

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	GO:A0A078HB67	UniProt:A0A078HB67	EnsemblPlants:CDY34739	ProteinID:CDY34739
ProteinID:CDY34739.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00057275001	InterPro:IPR012348	PFAM:PF03405
PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240	UniPathway:UPA00199
UniParc:UPI0004EE7513	SEG:seg	:	:	:	:

Description

BnaA01g32860DBnaA01g32860D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078HB67]

Coordinates

chrLK032340:+:406197..408447

Molecular Weight (calculated)

31091.0 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.505

Length

272 amino acids

Sequence
(BLAST)

001: MAMAMNRIVV LPSSYAYRPH QARVSRSPIA SSIRSATTEV TNGRKLYIPP REVHVQVKHS MPPQKLEIFK SLEGWADETL LTYLKPVEKS WQPTDFLPEA
101: ESEGFYDQVK ELRERCKELP DEYFVVLVGD MITEEALPTY QTMLNTLDGV RDETGASPTP WAVWTRAWTA EENRHGDLLN KYLYLSGRVD MRQIEKTIQY
201: LIGSGMDPKT ENNPYLGFIY TSFQERATFI SHGNTARHAK DLGDLKLAQI CGTIAADEKR HETAYTKIVE KL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.