Factsheet for VIT_05s0094g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00550.t01	Wine grape	cytosol	59.55	91.95
VIT_05s0094g00580.t01	Wine grape	plastid	76.18	84.81
VIT_05s0094g00730.t01	Wine grape	plastid	70.72	78.73
VIT_02s0012g02500.t01	Wine grape	cytosol	12.41	73.53
VIT_05s0094g00740.t01	Wine grape	plastid	64.52	72.83
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	10.92	72.13
VIT_12s0034g00180.t01	Wine grape	cytosol	17.62	66.98
VIT_00s0499g00030.t01	Wine grape	plastid	63.77	65.39
VIT_05s0094g00750.t01	Wine grape	plastid	51.36	64.09
AT3G02630.1	Thale cress	plastid	59.06	60.1
Bra021427.1-P	Field mustard	plastid	58.56	59.75
AT5G16240.1	Thale cress	plastid	57.82	59.14
CDX92006	Canola	plastid	58.06	59.09
CDX74242	Canola	plastid	58.06	59.09
Bra001057.1-P	Field mustard	plastid	58.06	59.09
CDX69459	Canola	plastid	57.82	58.69
Bra008631.1-P	Field mustard	plastid	57.82	58.69
CDY26510	Canola	plastid	57.57	58.44
VIT_18s0001g15460.t01	Wine grape	plastid	54.34	56.3
CDY34739	Canola	plastid	37.72	55.88
VIT_10s0003g04810.t01	Wine grape	cytosol	15.14	50.83
VIT_12s0034g00190.t01	Wine grape	extracellular	19.6	47.31
VIT_05s0094g00630.t01	Wine grape	plastid	17.87	42.86
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	26.55	40.07

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	ProteinID:CCB49389	ProteinID:CCB49389.1	UniProt:F6HB20	InterPro:FADS-2_CS
EMBL:FN595507	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF9	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI00021095B9	ArrayExpress:VIT_05s0094g00650	EnsemblPlantsGene:VIT_05s0094g00650	EnsemblPlants:VIT_05s0094g00650.t01	SEG:seg

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:F6HB20]

Coordinates

chr5:+:23998394..24006150

Molecular Weight (calculated)

45519.4 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.370

Length

403 amino acids

Sequence
(BLAST)

001: MNLNLNPLTF QPGKFPTLSL RPRSSNVSIA STITSGSDLT SRLHGSEVRK WHSISLPCFL LLSCKWVIIH LPNSPWPPCT ALCPGRLRIQ RRLLALLARC
101: NQLRNDFLPD PASDGFHEQV KELQERAKGN PDDYFVVLVG HMITEEALPT YQTQINITDG IRDETGASPS SWATWTRAWT AEENRHGDLL NKYLYLSGRV
201: DMKQIAKTIQ YLIGAGMDAQ NDNSPYLGSI YTSFQERATF ISHGSTARLA NQHGDKSLAQ ICGIIASDEK RHETAYTKIV EKLFEIDPNG TVLAFADRMR
301: KKITMPGLLM YDGCDENLFK HFSAVAQRLG VYTAKDYVDV LEFSVERWNV EKLTGLSSEG RKAQDYVCGL AQRLRKLEER AQEKAKQAPT IPFSWILDRE
401: VRL

Best Arabidopsis Sequence Match ( AT2G43710.2 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKSVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.