CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008631.1-P	Field mustard	plastid	99.75	99.75
CDY26510	Canola	plastid	97.23	97.23
AT5G16240.1	Thale cress	plastid	86.65	87.31
CDY34739	Canola	plastid	58.69	85.66
CDX92006	Canola	plastid	83.88	84.09
CDX74242	Canola	plastid	83.63	83.84
VIT_05s0094g00550.t01	Wine grape	cytosol	50.88	77.39
CDY17916	Canola	plastid	73.8	73.43
CDY44250	Canola	plastid	73.3	72.93
VIT_05s0094g00730.t01	Wine grape	plastid	66.25	72.65
CDX79807	Canola	plastid	73.3	72.57
CDX83464	Canola	plastid	72.54	72.36
VIT_05s0094g00580.t01	Wine grape	plastid	64.74	70.99
VIT_05s0094g00740.t01	Wine grape	plastid	58.69	65.27
CDX69460	Canola	plastid	65.49	64.52
CDY26509	Canola	plastid	64.99	64.02
CDY57537	Canola	plastid	64.48	62.59
CDY43232	Canola	plastid	63.98	62.1
VIT_05s0094g00650.t01	Wine grape	plastid	58.69	57.82
GSMUA_Achr5P25180_001	Banana	cytosol	20.91	50.3
VIT_05s0094g00630.t01	Wine grape	plastid	20.65	48.81

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	GO:A0A078BZT5	EnsemblPlants:CDX69459	ProteinID:CDX69459	ProteinID:CDX69459.1
ncoils:Coil	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00135439001	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155
PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	UniPathway:UPA00199	UniParc:UPI000189D7F7	:

Description

BnaA10g18080D

Coordinates

chrLK031790:-:334839..338109

Molecular Weight (calculated)

45477.2 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.514

Length

397 amino acids

Sequence
(BLAST)

001: MVMAMDRIAF TSSPSAYQRS YHPHGYRSSR VFMSSTIRPA STEVTNGRKP YLPPREVQLQ VKYSMPPQKL EIFKSLEGWA NDNLLPYLKP VEKSWQPTDF
101: LPEPESEGFY DQVKELRERC KELSDDYFVV LIGDMITEEA LPTYQTMINT LDGVRDETGA SPTPWAVWTR AWTAEENRHG DLLNKYLYLS GRVDMRQIEK
201: TIQYLIGSGM DPKTENNPYL GFIYTSFQER ATFISHGNTA GLAKKLGDSK LAQICGTIAA DEKRHETAYT KIVEKLFEID PDTTVVGFAD MMKKKIAMPA
301: HLMYDGCDDN LFEHFSSVAQ RLGVYTARDY ADILEFLVRR WNVENLVGLS GDGHKAQDYL CKLPARIRKL EERAQGRNKD AARNIPFSWI FGREIRA

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.