CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74242	Canola	plastid	98.99	98.99
AT3G02630.1	Thale cress	plastid	95.96	95.96
CDY34739	Canola	plastid	64.9	94.49
CDX69459	Canola	plastid	84.09	83.88
CDY26510	Canola	plastid	84.09	83.88
VIT_05s0094g00550.t01	Wine grape	cytosol	51.01	77.39
VIT_05s0094g00730.t01	Wine grape	plastid	67.42	73.76
CDY17916	Canola	plastid	73.48	72.93
CDY44250	Canola	plastid	73.48	72.93
CDX83464	Canola	plastid	73.23	72.86
CDX79807	Canola	plastid	73.48	72.57
VIT_05s0094g00580.t01	Wine grape	plastid	65.4	71.55
VIT_05s0094g00740.t01	Wine grape	plastid	59.34	65.83
CDX69460	Canola	plastid	66.16	65.01
CDY26509	Canola	plastid	65.66	64.52
CDY57537	Canola	plastid	64.39	62.35
CDY43232	Canola	plastid	64.39	62.35
VIT_05s0094g00650.t01	Wine grape	plastid	59.09	58.06
GSMUA_Achr5P25180_001	Banana	cytosol	20.71	49.7
VIT_05s0094g00630.t01	Wine grape	plastid	20.71	48.81

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	GO:A0A078DRU6	EnsemblPlants:CDX92006	ProteinID:CDX92006	ProteinID:CDX92006.1
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0006631
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00153661001	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6
InterPro:RNR-like	SUPFAM:SSF47240	UniPathway:UPA00199	UniParc:UPI0004EE251A	:	:

Description

BnaC03g33080D

Coordinates

chrLK031870:+:1223163..1225131

Molecular Weight (calculated)

44970.5 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.434

Length

396 amino acids

Sequence
(BLAST)

001: MAISMDRIVV SPSSYVCRPS QARGSRSSVV SMASTIRSAS TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEAESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAVWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD EKRHETAYTK IVEKLFEIDA DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLSGLSS EGHRAQDFVC GLPARIRRIE ERAQGRAKEA AKNVPFSWIF GREIRA

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.