Factsheet for VIT_05s0094g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	17.24	73.77
VIT_02s0012g02500.t01	Wine grape	cytosol	18.77	72.06
VIT_05s0094g00740.t01	Wine grape	plastid	96.17	70.31
VIT_12s0034g00180.t01	Wine grape	cytosol	28.35	69.81
VIT_05s0094g00730.t01	Wine grape	plastid	93.49	67.4
VIT_05s0094g00580.t01	Wine grape	plastid	92.72	66.85
VIT_05s0094g00650.t01	Wine grape	plastid	91.95	59.55
VIT_00s0499g00030.t01	Wine grape	plastid	80.84	53.69
AT3G02630.1	Thale cress	plastid	78.16	51.52
Bra021427.1-P	Field mustard	plastid	77.39	51.14
AT5G16240.1	Thale cress	plastid	77.01	51.02
CDX92006	Canola	plastid	77.39	51.01
CDX74242	Canola	plastid	77.39	51.01
Bra001057.1-P	Field mustard	plastid	77.39	51.01
CDX69459	Canola	plastid	77.39	50.88
Bra008631.1-P	Field mustard	plastid	77.39	50.88
CDY26510	Canola	plastid	77.01	50.63
VIT_18s0001g15460.t01	Wine grape	plastid	70.88	47.56
VIT_05s0094g00750.t01	Wine grape	plastid	58.62	47.37
VIT_12s0034g00190.t01	Wine grape	extracellular	28.35	44.31
CDY34739	Canola	plastid	45.21	43.38
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	27.97	27.34
VIT_10s0003g04810.t01	Wine grape	cytosol	10.34	22.5
VIT_05s0094g00630.t01	Wine grape	plastid	9.58	14.88

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	ProteinID:CCB49383	ProteinID:CCB49383.1	UniProt:F6HB13	InterPro:FADS-2_CS
EMBL:FN595507	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI00021095B4	ArrayExpress:VIT_05s0094g00550	EnsemblPlantsGene:VIT_05s0094g00550	EnsemblPlants:VIT_05s0094g00550.t01	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:F6HB13]

Coordinates

chr5:+:23898211..23901797

Molecular Weight (calculated)

29861.4 Da

IEP (calculated)

5.079

GRAVY (calculated)

-0.462

Length

261 amino acids

Sequence
(BLAST)

001: MITEEALPTY QAQINITDGI RDETGASPSS WATWTRAWTA EENRDGDLLN KYLYLSGRVD MKQIEKTIQY LIGAGMDVQM ENNPYLLFIY TSFQERATFI
101: SHGNTARLAN QHGDKSLAQI CGIIASDEKR HETAYTKIVE KLFEIDPNGT VLAFADRMRK KITMPGLLMY DGCDDDLFEH FSAVAQRLGV YTAKDYVDIL
201: EFFVERWNVE KLTRLSSEGR KAQDYVCGLA KRLRKLEERA QEKAQQAPTI PFSWIFDREG G

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.