Factsheet for VIT_10s0003g04810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g02500.t01	Wine grape	cytosol	25.83	45.59
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	85.83	38.58
Solyc06g059700.2.1	Tomato	cytosol	45.0	38.03
VIT_05s0094g00630.t01	Wine grape	plastid	47.5	33.93
PGSC0003DMT400079080	Potato	plastid	59.17	32.27
VIT_18s0001g15460.t01	Wine grape	plastid	89.17	27.51
PGSC0003DMT400013389	Potato	cytosol	58.33	27.03
GSMUA_Achr8P32640_001	Banana	cytosol	60.0	26.37
VIT_05s0094g00750.t01	Wine grape	plastid	65.83	24.46
Solyc01g009960.2.1	Tomato	plastid	59.17	23.59
GSMUA_Achr7P03060_001	Banana	plastid	59.17	22.54
AT1G43800.1	Thale cress	plastid	72.5	22.25
EES01858	Sorghum	mitochondrion, plastid	69.17	21.84
Os01t0880800-01	Rice	plastid	69.17	21.78
Zm00001d012221_P001	Maize	plastid	67.5	21.32
TraesCS3D01G403800.1	Wheat	plastid	66.67	20.94
HORVU3Hr1G091320.2	Barley	plastid	65.83	20.9
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	65.83	20.9
VIT_05s0094g00580.t01	Wine grape	plastid	61.67	20.44
VIT_00s0499g00030.t01	Wine grape	plastid	66.67	20.36
Solyc06g054670.1.1	Tomato	plastid	64.17	20.32
VIT_05s0094g00730.t01	Wine grape	plastid	60.0	19.89
PGSC0003DMT400095159	Potato	plastid	63.33	19.79
PGSC0003DMT400079075	Potato	plastid	63.33	19.49
PGSC0003DMT400079085	Potato	plastid	62.5	19.38
Solyc06g059720.2.1	Tomato	plastid	60.0	18.6
Solyc06g059710.2.1	Tomato	plastid	59.17	18.35
VIT_05s0094g00650.t01	Wine grape	plastid	50.83	15.14
VIT_12s0034g00180.t01	Wine grape	cytosol	11.67	13.21
VIT_05s0094g00740.t01	Wine grape	plastid	39.17	13.17
VIT_12s0034g00190.t01	Wine grape	extracellular	17.5	12.57
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	25.0	11.54
VIT_05s0094g00550.t01	Wine grape	cytosol	22.5	10.34
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	3.33	3.12
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	0.83	1.64

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	ProteinID:CCB55852	ProteinID:CCB55852.1	UniProt:F6HLX7	EMBL:FN595992
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0006631
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0055114
InterPro:IPR012348	PFAM:PF03405	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240
TIGR:TC52760	UniParc:UPI0002109B6E	ArrayExpress:VIT_10s0003g04810	EnsemblPlantsGene:VIT_10s0003g04810	EnsemblPlants:VIT_10s0003g04810.t01	:

Description

No Description!

Coordinates

chr10:-:8531533..8534758

Molecular Weight (calculated)

13478.9 Da

IEP (calculated)

4.243

GRAVY (calculated)

-0.446

Length

120 amino acids

Sequence
(BLAST)

001: MPSEKVEVFK SLEGWASEWV LPLLKPVEQL WQPQDFLPDP AQPFDAFSEQ VRELRDRTAE LPDEYLVVLV GDMITEDALP TYQTMINTLD GVRDETGASA
101: SPGPSEHGHG RRRRIATGIC

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.