Factsheet for Solyc06g054670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059700.2.1	Tomato	cytosol	34.83	92.96
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	60.95	88.85
PGSC0003DMT400079085	Potato	plastid	89.18	87.34
PGSC0003DMT400079075	Potato	plastid	89.45	86.92
Solyc06g059720.2.1	Tomato	plastid	82.32	80.62
Solyc06g059710.2.1	Tomato	plastid	80.21	78.55
Solyc01g009960.2.1	Tomato	plastid	57.26	72.09
GSMUA_Achr8P32640_001	Banana	cytosol	49.87	69.23
KRH15948	Soybean	cytosol, nucleus	58.84	66.17
Solyc06g034170.1.1	Tomato	peroxisome, plastid	18.47	64.81
VIT_10s0003g04810.t01	Wine grape	cytosol	20.32	64.17
VIT_18s0001g15460.t01	Wine grape	plastid	64.64	62.98
EES01858	Sorghum	mitochondrion, plastid	62.53	62.37
GSMUA_Achr7P03060_001	Banana	plastid	51.45	61.9
Zm00001d012221_P001	Maize	plastid	61.48	61.32
TraesCS3D01G403800.1	Wheat	plastid	61.21	60.73
Os01t0880800-01	Rice	plastid	60.95	60.63
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	60.16	60.32
HORVU3Hr1G091320.2	Barley	plastid	60.16	60.32
KRH18113	Soybean	plastid	59.1	59.26
Solyc03g063110.2.1	Tomato	plastid	60.95	58.78
Solyc11g008680.1.1	Tomato	plastid	60.95	58.78
AT1G43800.1	Thale cress	plastid	60.16	58.31
Solyc06g053480.2.1	Tomato	plastid	56.73	54.16
KRH18114	Soybean	cytosol	50.66	51.2
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	35.36	50.19

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	UniProt:K4C6F3
PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240
EnsemblPlantsGene:Solyc06g054670.1	EnsemblPlants:Solyc06g054670.1.1	UniParc:UPI0002765D74	:	:	:

Description

No Description!

Coordinates

chr6:+:37433484..37434767

Molecular Weight (calculated)

43691.8 Da

IEP (calculated)

7.291

GRAVY (calculated)

-0.333

Length

379 amino acids

Sequence
(BLAST)

001: MQTTNFSQFN LPSILCRKTT SSRRLSPVLA VASPTITSPS RHQVTHSMPP EKLEIFRSLE PWVSENILPF LKPVEKCWQP IEFLPDPSQG PEQFEEEVRA
101: LRQRVLGLSD EYFVMLVGNM LTEDALPTYQ TMINTLDGVR DETGSSPCPW AIWTRAWTAE ENRHGDLLRT YLYLSGRVDM LMVDKTLQYL IGAGVDIRLE
201: NNPYLGFVYT SFQERATCSS HGNMARLATQ GGDPMLARMC GAIAADEKRH EHAYTRIVDK LLEVDPNATM LAIAHMMKMK IVMPMHLMYD GQDPNIFEHF
301: SSIIERQGIY TSRHYAEILE FFITRWELEK LQGLSGEARR AQDYVCRLPL RVRKLENRVK KIEPRQVKFS WIFNKQVNA

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.