Factsheet for Solyc01g009960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013389	Potato	cytosol	66.11	76.83
Solyc06g059700.2.1	Tomato	cytosol	34.88	73.94
Solyc06g034170.1.1	Tomato	peroxisome, plastid	23.92	66.67
VIT_10s0003g04810.t01	Wine grape	cytosol	23.59	59.17
GSMUA_Achr8P32640_001	Banana	cytosol	52.49	57.88
Solyc06g059710.2.1	Tomato	plastid	74.09	57.62
Solyc06g059720.2.1	Tomato	plastid	73.75	57.36
Solyc06g054670.1.1	Tomato	plastid	72.09	57.26
KRH15948	Soybean	cytosol, nucleus	63.12	56.38
VIT_18s0001g15460.t01	Wine grape	plastid	67.77	52.44
GSMUA_Achr7P03060_001	Banana	plastid	53.82	51.43
EES01858	Sorghum	mitochondrion, plastid	62.79	49.74
Solyc11g008680.1.1	Tomato	plastid	64.45	49.36
Os01t0880800-01	Rice	plastid	62.46	49.34
KRH18113	Soybean	plastid	61.46	48.94
Zm00001d012221_P001	Maize	plastid	61.46	48.68
HORVU3Hr1G091320.2	Barley	plastid	60.47	48.15
TraesCS3D01G403800.1	Wheat	plastid	60.47	47.64
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	59.8	47.62
Solyc03g063110.2.1	Tomato	plastid	62.13	47.58
AT1G43800.1	Thale cress	plastid	61.79	47.57
Solyc06g053480.2.1	Tomato	plastid	61.13	46.35
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	37.87	42.7
KRH18114	Soybean	cytosol	51.49	41.33

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	UniProt:K4ATJ1	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574
PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:Solyc01g009960.2	EnsemblPlants:Solyc01g009960.2.1
UniParc:UPI00027618F6	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:K4ATJ1]

Coordinates

chr1:-:4552174..4553668

Molecular Weight (calculated)

34580.3 Da

IEP (calculated)

5.233

GRAVY (calculated)

-0.464

Length

301 amino acids

Sequence
(BLAST)

001: MASSPIAPPS RHHITHSMPH EKLEVFKSLE SWVSENLLDF RKPIEKCWQP SEFLPDPSQG FDRSNEEVCE LRQRVLGLPD EYFVMLVGNM LGEDSLPTYQ
101: TMINTWDGVR DKTGSSSCPW AIWTRSWAAE ENRHGDLLRT YIYLSGRVDM MMIDKTTQYM IRAGMDNGTE NNPYMGFVYA SFQERATFMS HGNMARLAKE
201: AGDPVLARIC GTIAADEKRH ENAYIKIVEK LLEVDPDTTM LAISNMMKKR IVMPQHLMYD GQDSNLFENY SAVSQRLGVH TTRDYGEIIE FFYNTMEIGK
301: T

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.