Factsheet for Solyc03g063110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002555	Potato	plastid	96.95	96.95
Solyc11g008680.1.1	Tomato	plastid	84.22	84.22
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.11	84.15
VIT_00s0499g00030.t01	Wine grape	plastid	83.46	83.46
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	31.81	79.11
Solyc06g053480.2.1	Tomato	plastid	78.88	78.09
TraesCS3B01G463000.1	Wheat	plastid	76.59	76.59
TraesCS3D01G421700.1	Wheat	plastid	76.34	76.53
Zm00001d012033_P002	Maize	mitochondrion	75.83	76.02
Os01t0919900-01	Rice	plastid	77.1	75.75
EES04113	Sorghum	plastid	76.34	75.57
Os04t0379900-01	Rice	plastid	74.81	75.38
GSMUA_Achr7P22860_001	Banana	plastid	68.96	75.07
TraesCS2A01G280700.2	Wheat	plastid	74.81	75.0
TraesCS2D01G279500.2	Wheat	golgi, plastid	74.55	74.74
TraesCS2B01G298000.1	Wheat	plastid	74.55	74.74
Zm00001d025170_P001	Maize	plastid	74.55	74.74
EES10606	Sorghum	plastid	74.3	74.49
GSMUA_Achr8P08750_001	Banana	plastid	66.67	74.22
Zm00001d004019_P001	Maize	plastid	73.79	73.98
Zm00001d042344_P002	Maize	plastid	77.35	73.79
HORVU5Hr1G039730.1	Barley	plastid	68.7	70.13
TraesCS5A01G123600.2	Wheat	plastid	68.7	70.13
TraesCS5D01G131500.1	Wheat	plastid	67.43	69.37
TraesCS5B01G123200.1	Wheat	plastid	67.94	69.35
TraesCS5D01G548700.1	Wheat	plastid	67.43	67.77
TraesCS5B01G539600.1	Wheat	plastid	66.41	66.75
Solyc06g059700.2.1	Tomato	cytosol	23.92	66.2
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	74.81	66.07
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	66.92	65.91
KXG30261	Sorghum	plastid	69.21	65.38
TraesCS4A01G326700.1	Wheat	plastid	67.94	65.28
HORVU3Hr1G094050.3	Barley	plastid	76.59	64.73
GSMUA_Achr5P25160_001	Banana	plastid	64.38	64.21
Solyc01g009960.2.1	Tomato	plastid	47.58	62.13
Solyc06g034170.1.1	Tomato	peroxisome, plastid	17.05	62.04
TraesCS3A01G426800.3	Wheat	plastid	75.32	61.41
Os02t0504800-01	Rice	plastid	50.13	61.18
Zm00001d050552_P001	Maize	plastid	68.45	61.14
Solyc06g054670.1.1	Tomato	plastid	58.78	60.95
Solyc06g059710.2.1	Tomato	plastid	55.47	56.33
Solyc06g059720.2.1	Tomato	plastid	54.96	55.81

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	UniProt:K4BH59	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574
PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:Solyc03g063110.2	EnsemblPlants:Solyc03g063110.2.1
UniParc:UPI00027692BC	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:K4BH59]

Coordinates

chr3:-:33238264..33242402

Molecular Weight (calculated)

44788.5 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.480

Length

393 amino acids

Sequence
(BLAST)

001: MALNFNPPTF QSIQTTRRPC SPLRSHRVLM ASTLRPPSVE GGNVKKPFSP PREVHVQVTH SMPPEKREIF DSLQGWAENN ILVHLKPVEK CWQASDFLPD
101: PASEGFEDQV KELRERCKEI PDDYFVVLVG DMITEEALPT YQTMINTLDS VRDETGASLT PWAIWTRAWT AEENRHGDLL NKYLYLSGRV DMRQIEKTIQ
201: YLIGSGMDPR TENNPYLGFI YTSFQERATF ISHGNTARHA KEHGDMKLAQ VCGIIAADEK RHETAYTKIV EKLFEVDPDG TVMAVADMMR KKISMPAHLM
301: YDGRDDNLFE HFSAVAQRLG VYTAKDYADI LEFLVGRWEI EKLTGLSGEG HKAQDYVCGL APRIRKLEER AQARAKQKAP VPFSWVFGKD IKL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.