Factsheet for TraesCS3D01G421700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 22160430
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G463000.1	Wheat	plastid	99.23	98.98
Os01t0919900-01	Rice	plastid	89.29	87.5
Zm00001d012033_P002	Maize	mitochondrion	87.24	87.24
EES04113	Sorghum	plastid	88.27	87.15
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	36.22	86.59
HORVU3Hr1G094050.3	Barley	plastid	98.21	82.8
Zm00001d042344_P002	Maize	plastid	86.99	82.77
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.4	80.38
Solyc06g053480.2.1	Tomato	plastid	78.57	77.58
TraesCS2D01G279500.2	Wheat	golgi, plastid	77.04	77.04
PGSC0003DMT400042118	Potato	plastid	77.81	76.83
CDY44250	Canola	plastid	78.06	76.69
VIT_12s0034g00180.t01	Wine grape	cytosol	20.66	76.42
Bra000321.1-P	Field mustard	plastid	77.55	76.38
CDX83464	Canola	plastid	77.55	76.38
PGSC0003DMT400002555	Potato	plastid	76.53	76.34
Solyc03g063110.2.1	Tomato	plastid	76.53	76.34
VIT_00s0499g00030.t01	Wine grape	plastid	76.28	76.08
Bra004778.1-P	Field mustard	plastid	77.81	76.06
CDX79807	Canola	plastid	77.81	76.06
KRH71270	Soybean	endoplasmic reticulum, nucleus	75.77	75.96
TraesCS3A01G426800.3	Wheat	plastid	93.37	75.93
CDY17916	Canola	plastid	77.04	75.69
VIT_05s0094g00750.t01	Wine grape	plastid	62.24	75.54
GSMUA_Achr7P22860_001	Banana	plastid	69.39	75.35
AT2G43710.1	Thale cress	plastid	77.04	75.31
Solyc11g008680.1.1	Tomato	plastid	74.23	74.05
KRH50195	Soybean	plastid	75.77	73.88
PGSC0003DMT400041874	Potato	plastid	73.98	73.79
GSMUA_Achr8P08750_001	Banana	plastid	66.07	73.37
TraesCS5D01G131500.1	Wheat	plastid	69.39	71.2
TraesCS5D01G548700.1	Wheat	plastid	68.88	69.05
GSMUA_Achr5P25160_001	Banana	plastid	66.84	66.5
TraesCS3D01G403800.1	Wheat	plastid	61.99	63.61
VIT_12s0034g00190.t01	Wine grape	extracellular	26.28	61.68
TraesCS2D01G074000.1	Wheat	plastid	53.32	51.6
TraesCS3D01G413500.1	Wheat	plastid	50.0	46.89
TraesCS5D01G244700.1	Wheat	plastid	46.43	44.72
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	51.02	44.54
TraesCS2D01G074100.1	Wheat	mitochondrion	51.53	44.3

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS3D01G421700	EnsemblPlants:TraesCS3D01G421700.1	TIGR:cd01050
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:533881951..533886485

Molecular Weight (calculated)

44259.1 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.435

Length

392 amino acids

Sequence
(BLAST)

001: MASRMALRPH GVTPPLAAGR GGRRNGSVRV LAVASSASAK IESKKTFAPP KEVHVQVTHS MPPQKMEIFQ SLDGWARDNL LLHLKPVEKC WQPQDFLPDP
101: ASDGFHDEVK ELRERAKEIP DDYLVCLVGD MITEEALPTY QTMLNTLDGV RDETGASPTA WAVWTRAWTA EENRHGDLLN KYLYLTGRVD MRQIEKTIQY
201: LIGSGMDPRT ENNPYLGFIY TSFQERATFI SHGNTARHAK DFGDLKLAQI CGIIASDEKR HETAYTKIVE KLFEIDPDGT VLALADMMRK KIAMPAHLMF
301: DGQDEKLFDH FSMVAQRLGV YTARDYADIL EFLVGRWKVP ELTGLSGEGH KAQDYLCTLA GRIRKLDERA QSRAKQAGKM PFSWVYGREV QM

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.