Factsheet for TraesCS3D01G413500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	95.93	95.7
TraesCS3A01G418000.1	Wheat	plastid	93.54	93.32
HORVU3Hr1G061520.7	Barley	cytosol, peroxisome	85.89	82.34
HORVU3Hr1G092740.3	Barley	cytosol, peroxisome	86.12	81.82
Os03t0423300-01	Rice	plastid	73.68	73.68
OQU92381	Sorghum	plastid	69.86	65.03
TraesCS5D01G244700.1	Wheat	plastid	58.85	60.44
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	37.32	53.42
TraesCS2D01G074000.1	Wheat	plastid	50.24	51.85
TraesCS3D01G403800.1	Wheat	plastid	47.13	51.57
GSMUA_Achr5P25190_001	Banana	mitochondrion	8.13	51.52
TraesCS5D01G131500.1	Wheat	plastid	46.89	51.31
TraesCS2D01G279500.2	Wheat	golgi, plastid	47.13	50.26
TraesCS3D01G421700.1	Wheat	plastid	46.89	50.0
TraesCS5D01G548700.1	Wheat	plastid	45.45	48.59
AT3G02620.2	Thale cress	plastid	46.41	47.78
AT5G16230.1	Thale cress	plastid	45.69	47.63
Bra039178.1-P	Field mustard	plastid	44.98	47.59
CDY26509	Canola	plastid	45.45	47.15
CDX69460	Canola	plastid	45.45	47.15
Bra008632.1-P	Field mustard	plastid	45.45	47.15
AT3G02610.2	Thale cress	plastid	46.41	46.97
CDY57537	Canola	plastid	45.45	46.45
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	49.52	46.1
CDY43232	Canola	plastid	44.98	45.97
TraesCS2D01G074100.1	Wheat	mitochondrion	48.33	44.3
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	15.07	43.15

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF14	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS3D01G413500	EnsemblPlants:TraesCS3D01G413500.1	TIGR:cd01050
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:525750998..525752436

Molecular Weight (calculated)

45750.6 Da

IEP (calculated)

7.155

GRAVY (calculated)

-0.176

Length

418 amino acids

Sequence
(BLAST)

001: MAKLGLAVGT SARFSCFFSN KSDAGSGRAT RLGWILFPAN PRCSSLATRW TAAAAAAVEA PPRSVDMGCA PVPREQVEIV QSLNGWVAEN MLPLLNPVES
101: SWQPHDFLPC SVAAPGASEE EALSAFTEGV AALRMGAAGV PDEILVCLVG NMVTEEALPS YQSMGNRTEG TADDTGASSL PWAQWIRGWT AEENRHGDLL
201: NRYLYLSGRV DMRQVETTVH HLLRNGMEML VPKSPYHSVI YGAFQERATF VSHVHTARLA GQHGDQALAK ICGVIAADEK RHEAGYTRVC AKLFEVDPDG
301: MVRALAHVMR GKVTMPGLLM SDGRDADGSL FERFSAVAQR AGVYTARDYG DLVEHFVRRW RVAELAGLSG EGRRAQEYVC GLPPKIRRME ELAHQRAARS
401: ELRPARFSWI FDRHVMVG

Best Arabidopsis Sequence Match ( AT3G02610.1 )
(BLAST)

001: MALLLNSTIT VAMKQNPLVA VSFPRTTCLG SSFSPPRLLR VSCVATNPSK TSEETDKKKF RPIKEVPNQV THTITQEKLE IFKSMENWAQ ENLLSYLKPV
101: EASWQPQDFL PETNDEDRFY EQVKELRDRT KEIPDDYFVV LVGDMITEEA LPTYQTTLNT LDGVKDETGG SLTPWAVWVR AWTAEENRHG DLLNKYLYLS
201: GRVDMRHVEK TIQYLIGSGM DSKFENNPYN GFIYTSFQER ATFISHGNTA KLATTYGDTT LAKICGTIAA DEKRHETAYT RIVEKLFEID PDGTVQALAS
301: MMRKRITMPA HLMHDGRDDD LFDHYAAVAQ RIGVYTATDY AGILEFLLRR WEVEKLGMGL SGEGRRAQDY LCTLPQRIRR LEERANDRVK LASKSKPSVS
401: FSWIYGREVE L

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.