Factsheet for GSMUA_Achr6P01210_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
plastid 3
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	39.38	70.12
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	37.33	68.99
GSMUA_Achr8P32640_001	Banana	cytosol	58.9	63.0
GSMUA_Achr5P25190_001	Banana	mitochondrion	13.01	57.58
GSMUA_Achr7P03060_001	Banana	plastid	59.59	55.24
GSMUA_Achr7P22860_001	Banana	plastid	65.75	53.19
GSMUA_Achr8P08750_001	Banana	plastid	61.99	51.27
HORVU7Hr1G040140.1	Barley	cytosol, nucleus, peroxisome	55.14	50.16
GSMUA_Achr5P25160_001	Banana	plastid	64.04	47.46
Zm00001d030165_P001	Maize	cytosol	54.45	47.32
Bra039178.1-P	Field mustard	plastid	63.01	46.58
AT3G02620.2	Thale cress	plastid	64.73	46.55
AT3G02610.2	Thale cress	plastid	65.75	46.49
AT5G16230.1	Thale cress	plastid	63.36	46.13
CDY26509	Canola	plastid	63.01	45.66
CDX69460	Canola	plastid	63.01	45.66
Bra008632.1-P	Field mustard	plastid	63.01	45.66
CDY57537	Canola	plastid	63.7	45.48
CDY43232	Canola	plastid	63.36	45.23
TraesCS2D01G074000.1	Wheat	plastid	60.62	43.7
TraesCS2A01G075300.1	Wheat	mitochondrion	60.62	43.38
HORVU2Hr1G012780.1	Barley	mitochondrion	58.9	42.79
TraesCS7A01G196500.1	Wheat	plastid	58.9	42.36
Os08t0200100-01	Rice	plastid	58.22	42.08
TraesCS7B01G102300.1	Wheat	plastid	58.56	42.01
HORVU2Hr1G012600.2	Barley	mitochondrion	57.88	41.83
KXG38794	Sorghum	plastid	56.51	41.56
Zm00001d024273_P001	Maize	plastid	58.22	40.09
HORVU2Hr1G006990.1	Barley	plastid	55.82	39.85
TraesCS2A01G075500.1	Wheat	plastid	60.62	39.78
KXG24679	Sorghum	plastid	57.53	39.72
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	59.25	38.53
TraesCS2B01G090400.1	Wheat	mitochondrion	58.56	38.0
TraesCS5A01G236800.1	Wheat	plastid	52.05	37.62
TraesCS5A01G237000.1	Wheat	plastid	52.05	37.62
TraesCS5B01G235800.1	Wheat	plastid	51.71	37.56
TraesCS3D01G413500.1	Wheat	plastid	53.42	37.32
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	53.42	37.23
TraesCS5B01G235900.1	Wheat	plastid	51.71	37.1
TraesCS2A01G075400.1	Wheat	mitochondrion	57.88	37.06
TraesCS2D01G074100.1	Wheat	mitochondrion	57.88	37.06
Os08t0199400-01	Rice	plastid	53.08	36.99
TraesCS5D01G244700.1	Wheat	plastid	51.37	36.85
TraesCS5A01G237800.1	Wheat	plastid	51.03	36.61
Os03t0423300-01	Rice	plastid	52.4	36.6
EER91728	Sorghum	mitochondrion, plastid	53.42	36.36
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	18.15	36.3
TraesCS3A01G418000.1	Wheat	plastid	52.05	36.28
Zm00001d030328_P001	Maize	mitochondrion	53.08	35.71
Zm00001d014498_P001	Maize	plastid	49.66	35.54
HORVU5Hr1G068310.1	Barley	plastid	51.71	35.28
KXG35977	Sorghum	plastid	49.32	34.78
Zm00001d021059_P001	Maize	plastid	48.63	34.72
EER88838	Sorghum	plastid	48.63	34.63
HORVU3Hr1G061520.7	Barley	cytosol, peroxisome	51.71	34.63
TraesCS2B01G090700.1	Wheat	plastid	46.92	34.51
HORVU3Hr1G092740.3	Barley	cytosol, peroxisome	51.71	34.32
OQU92381	Sorghum	plastid	51.37	33.41
Os06t0503800-00	Rice	plastid	27.74	33.2
Os03t0741000-00	Rice	plastid	33.9	33.0
GSMUA_Achr5P25180_001	Banana	cytosol	17.81	31.52

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G01210_001	EnsemblPlants:GSMUA_Achr6P01210_001
EnsemblPlants:GSMUA_Achr6T01210_001	InterPro:IPR012348	UniProt:M0T369	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI000295DEC0	:	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G01210_001]

Coordinates

chr6:-:795978..797750

Molecular Weight (calculated)

33824.7 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.409

Length

292 amino acids

Sequence
(BLAST)

001: MISLIIFFNS FYDVYSTRIK TLETFPEKLE VVKSMEGWME DNVLTFLKPI RERAAEIPDA YYVCLVGNMI TEEALPTYEN VLNTFDGTRD ETGASMTAWA
101: RWTRKWTAEE NRHGDVLNKY LYLSGRLNMR QIEKTIQYLI GSGMMIEADN DPYRGFVYTS FQERATFISH GNTARKAKEH GDVLLAKICG LIAADEKRHE
201: MAYTKIVEKL FEVDPEATML ALADMMRKRI KMPARWKVGE VTGLSGEGRR AQDYVCSLPS RLRKTEERAQ ERAEKKTSMV PFSWIFNREV EI

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.