Factsheet for PGSC0003DMT400041719

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079080	Potato	plastid	44.52	29.55
PGSC0003DMT400013389	Potato	cytosol	44.52	25.1
PGSC0003DMT400041874	Potato	plastid	67.12	24.94
PGSC0003DMT400002555	Potato	plastid	63.7	23.66
PGSC0003DMT400042118	Potato	plastid	58.9	21.66
Bra039178.1-P	Field mustard	plastid	52.74	19.49
AT3G02620.2	Thale cress	plastid	54.11	19.46
AT5G16230.1	Thale cress	plastid	53.42	19.45
AT3G02610.2	Thale cress	plastid	54.79	19.37
Bra008632.1-P	Field mustard	plastid	52.74	19.11
CDX69460	Canola	plastid	52.74	19.11
CDY57537	Canola	plastid	53.42	19.07
CDY26509	Canola	plastid	52.05	18.86
CDY43232	Canola	plastid	52.05	18.58
Os03t0741000-00	Rice	plastid	37.67	18.33
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.3	18.15
PGSC0003DMT400079075	Potato	plastid	47.95	17.95
PGSC0003DMT400079085	Potato	plastid	47.26	17.83
HORVU7Hr1G040140.1	Barley	cytosol, nucleus, peroxisome	38.36	17.45
Zm00001d030165_P001	Maize	cytosol	39.73	17.26
PGSC0003DMT400095159	Potato	plastid	44.52	16.93
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	29.45	16.54
KXG38794	Sorghum	plastid	41.1	15.11
Os03t0423300-01	Rice	plastid	43.15	15.07
TraesCS3D01G413500.1	Wheat	plastid	43.15	15.07
TraesCS2D01G074000.1	Wheat	plastid	41.78	15.06
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	43.15	15.04
TraesCS2A01G075300.1	Wheat	mitochondrion	41.78	14.95
HORVU2Hr1G012780.1	Barley	mitochondrion	41.1	14.93
HORVU2Hr1G012600.2	Barley	mitochondrion	41.1	14.85
TraesCS3A01G418000.1	Wheat	plastid	42.47	14.8
TraesCS7A01G196500.1	Wheat	plastid	41.1	14.78
TraesCS7B01G102300.1	Wheat	plastid	41.1	14.74
Os08t0200100-01	Rice	plastid	40.41	14.6
Zm00001d024273_P001	Maize	plastid	41.78	14.39
TraesCS2B01G090700.1	Wheat	plastid	39.04	14.36
HORVU3Hr1G092740.3	Barley	cytosol, peroxisome	42.47	14.09
Os08t0199400-01	Rice	plastid	40.41	14.08
OQU92381	Sorghum	plastid	43.15	14.03
HORVU3Hr1G061520.7	Barley	cytosol, peroxisome	41.78	13.99
HORVU2Hr1G006990.1	Barley	plastid	39.04	13.94
Os06t0503800-00	Rice	plastid	23.29	13.93
TraesCS5A01G237000.1	Wheat	plastid	38.36	13.86
TraesCS5A01G237800.1	Wheat	plastid	38.36	13.76
Zm00001d014498_P001	Maize	plastid	38.36	13.73
TraesCS5B01G235800.1	Wheat	plastid	37.67	13.68
Zm00001d030328_P001	Maize	mitochondrion	40.41	13.59
EER91728	Sorghum	mitochondrion, plastid	39.73	13.52
TraesCS2A01G075500.1	Wheat	plastid	41.1	13.48
KXG24679	Sorghum	plastid	39.04	13.48
KXG35977	Sorghum	plastid	37.67	13.29
Zm00001d021059_P001	Maize	plastid	36.99	13.2
EER88838	Sorghum	plastid	36.99	13.17
TraesCS2B01G090400.1	Wheat	mitochondrion	40.41	13.11
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	39.73	12.92
TraesCS5A01G236800.1	Wheat	plastid	35.62	12.87
HORVU5Hr1G068310.1	Barley	plastid	37.67	12.85
TraesCS5B01G235900.1	Wheat	plastid	35.62	12.78
TraesCS5D01G244700.1	Wheat	plastid	35.62	12.78
TraesCS2D01G074100.1	Wheat	mitochondrion	39.73	12.72
TraesCS2A01G075400.1	Wheat	mitochondrion	39.73	12.72
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	2.05	2.34
GSMUA_Achr5P25190_001	Banana	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:102604533	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	UniProt:M1BBV4	PFAM:PF03405
EnsemblPlantsGene:PGSC0003DMG400016177	PGSC:PGSC0003DMG400016177	EnsemblPlants:PGSC0003DMT400041719	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI0002950D33	RefSeq:XP_015166741.1	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400016177]

Coordinates

chr11:+:3185013..3188541

Molecular Weight (calculated)

16558.3 Da

IEP (calculated)

4.212

GRAVY (calculated)

-0.478

Length

146 amino acids

Sequence
(BLAST)

001: MSQTTGSWKC EEGIHSSTRG ACSSNPFHAR YGFTESLDAP KACREIWQPT DFLPDPASEG FDEQVKELRE RCKEIPDDYF LVLIGDMITE ETLPTYQTMI
101: NTLDGVRDGT GASLTPWAIW TRAWTAEENG HGDLLNKYFI FLEELI

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.