Factsheet for TraesCS5B01G235800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G237000.1	Wheat	plastid	94.78	94.31
TraesCS5B01G235900.1	Wheat	plastid	90.05	88.94
HORVU5Hr1G068310.1	Barley	plastid	93.28	87.62
KXG35977	Sorghum	plastid	62.44	60.63
Zm00001d014498_P001	Maize	plastid	61.44	60.54
EER88838	Sorghum	plastid	61.19	60.0
Zm00001d021059_P001	Maize	plastid	60.7	59.66
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	61.69	59.19
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	37.56	51.71
TraesCS7B01G102300.1	Wheat	plastid	51.49	50.86
GSMUA_Achr5P25190_001	Banana	mitochondrion	8.21	50.0
TraesCS2B01G298000.1	Wheat	plastid	47.76	48.98
TraesCS5B01G123200.1	Wheat	plastid	46.77	48.83
CDY26509	Canola	plastid	47.51	47.39
CDX69460	Canola	plastid	47.51	47.39
Bra008632.1-P	Field mustard	plastid	47.51	47.39
Bra039178.1-P	Field mustard	plastid	46.52	47.34
TraesCS3B01G463000.1	Wheat	plastid	46.27	47.33
AT5G16230.1	Thale cress	plastid	47.01	47.13
TraesCS5B01G539600.1	Wheat	plastid	45.27	46.55
CDY57537	Canola	plastid	47.01	46.21
AT3G02620.2	Thale cress	plastid	46.52	46.06
CDY43232	Canola	plastid	46.77	45.97
AT3G02610.2	Thale cress	plastid	47.01	45.76
TraesCS2B01G090400.1	Wheat	mitochondrion	48.26	43.11
TraesCS2B01G090700.1	Wheat	plastid	41.29	41.81
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	13.68	37.67

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF7	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS5B01G235800	EnsemblPlants:TraesCS5B01G235800.1	TIGR:cd01050
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:416389892..416391215

Molecular Weight (calculated)

44836.7 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.313

Length

402 amino acids

Sequence
(BLAST)

001: MSMLKCFPHG LAMPAQATWC RGRAAARAGR WACKVTSTAN FEDTVTGMAA QEQAEAEVVR SLGLSGWVEE QLLPLLTPVD DAWQPSDLLP CFSPSAAGLS
101: AEQQPSMMMT TEELQAQASG VPDDVLVCLV GNMVTEEALP TYMCMGNRVP GYRDDTGCSD LPWARWLRGW MAEENRHGDL LNRYLYLSGR VDMRQVERTV
201: HHLLRNGMQM LRPSSPYHNA IYGSFQERAT FISHAHTAKQ AARHGDRCLA KICGVVAADE KRHETAYTKV AAKLFELDPD GMVQALAAVL RDKITMPGQL
301: MTDGREADLF EHFSAVAQRT GVYTARDYGD MVEHFVRRWK VADLAGGQLS GEGRRAQEYV CGLPRKIRRV EELAHDRAIK AAKEPEFARF SWVFDRPVCI
401: RA

Best Arabidopsis Sequence Match ( AT3G02620.1 )
(BLAST)

001: MALLLNSTMT VAMKQNPATA VSFMQTTCLG SSFSPPRHLQ VSCVATNPSK TFRPIKEVSN QVTHTITQEK LEIFKSMENW AQENLLSYLK PVETSWQPQD
101: FLPETKDEDR FYEQVKELRD RTKEIPDDYF VVLVGDMITE EALPTYQTVM NTLDGAKDET GVSLTPWAVW LRAWTAEENR HGDLLNKYLY LSGRVDTRHV
201: EKTIQYLIGS GMDTKYENNP YNGYIYTSFQ ERATFISHAN TAKLATTYGD TTLAKICGTI AADEKRHEMA YTRIVEKLFE IDPDGTVQAL ASMMRKRITM
301: PAQLMHDGRD DNLFDHYAAV AQRIGVYTAT DYAGILEFLL RRWEVEKLGM GLSGEGRRAQ DYLCTLPQRI RRLEERADDR VKRASKSKPS VSFSWIYGRE
401: VEL

Arabidopsis Description

Plant stearoyl-acyl-carrier-protein desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VGR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.