Factsheet for TraesCS5A01G237000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G235800.1	Wheat	plastid	94.31	94.78
TraesCS5A01G236800.1	Wheat	plastid	92.08	92.08
HORVU5Hr1G068310.1	Barley	plastid	93.56	88.32
TraesCS5A01G237800.1	Wheat	plastid	85.4	84.77
Zm00001d014498_P001	Maize	plastid	61.14	60.54
KXG35977	Sorghum	plastid	61.88	60.39
EER88838	Sorghum	plastid	60.64	59.76
Zm00001d021059_P001	Maize	plastid	60.4	59.66
TraesCS3A01G418000.1	Wheat	plastid	61.63	59.43
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	37.62	52.05
TraesCS7A01G196500.1	Wheat	plastid	50.25	50.0
GSMUA_Achr5P25190_001	Banana	mitochondrion	8.17	50.0
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	46.29	49.47
TraesCS2A01G280700.2	Wheat	plastid	47.52	48.98
TraesCS5A01G123600.2	Wheat	plastid	46.53	48.83
TraesCS2A01G075300.1	Wheat	mitochondrion	48.76	48.28
CDY26509	Canola	plastid	46.78	46.9
CDX69460	Canola	plastid	46.78	46.9
Bra008632.1-P	Field mustard	plastid	46.78	46.9
AT5G16230.1	Thale cress	plastid	46.29	46.63
Bra039178.1-P	Field mustard	plastid	45.54	46.58
CDY57537	Canola	plastid	46.04	45.48
CDY43232	Canola	plastid	45.79	45.23
AT3G02620.2	Thale cress	plastid	45.3	45.07
AT3G02610.2	Thale cress	plastid	46.04	45.04
TraesCS2A01G075500.1	Wheat	plastid	48.76	44.27
TraesCS4A01G326700.1	Wheat	plastid	44.31	43.77
TraesCS2A01G075400.1	Wheat	mitochondrion	48.27	42.76
TraesCS3A01G426800.3	Wheat	plastid	46.29	38.8
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	13.86	38.36

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF7	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS5A01G237000	EnsemblPlants:TraesCS5A01G237000.1	TIGR:cd01050
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:452266976..452268304

Molecular Weight (calculated)

45001.8 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.314

Length

404 amino acids

Sequence
(BLAST)

001: MSMLKPFPHG LAMPAQAHPT WCRSRAAARA GRWACKVTAT ANFEGTVMGM ASQEQAEAEV VRGLSLSGWV EEQLLPLLTP VDDAWQPSDL LPCFSLSAAG
101: LSDEQQPSMM MTTEELQAQA SGVPDDVLVC LVGNMVTEEA LPTYMCMGNR VPGYRDDTGC SDLPWARWIR GWTAEENRHG DLLNGYLYLS GRVDMRQIER
201: TVHHLLRNGM QMLRPSSPYH NAVYGSFQER ATFISHAHTA KQAARHGDRC LAKICGVVAA DEKRHETAYT KVAAKIFELD PDGMVRALAA VLRDKITMPG
301: QLMTDGRDAD LFEHFSAVAQ RTGVYTARDY GDMVEHFVRR WKVADLGGGQ LSSEGRRAQE YVCGLPRKIR RVEELAHDRA IKAAKEAEFA RFSWVFDRPV
401: CIRA

Best Arabidopsis Sequence Match ( AT3G02610.2 )
(BLAST)

001: MKMALLLNST ITVAMKQNPL VAVSFPRTTC LGSSFSPPRL LRVSCVATNP SKTSEETDKK KFRPIKEVPN QVTHTITQEK LEIFKSMENW AQENLLSYLK
101: PVEASWQPQD FLPETNDEDR FYEQVKELRD RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLTPWAVW VRAWTAEENR HGDLLNKYLY
201: LSGRVDMRHV EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN TAKLATTYGD TTLAKICGTI AADEKRHETA YTRIVEKLFE IDPDGTVQAL
301: ASMMRKRITM PAHLMHDGRD DDLFDHYAAV AQRIGVYTAT DYAGILEFLL RRWEVEKLGM GLSGEGRRAQ DYLCTLPQRI RRLEERANDR VKLASKSKPS
401: VSFSWIYGRE VEL

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.