Factsheet for TraesCS3A01G408700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G403800.1	Wheat	plastid	96.56	95.55
HORVU3Hr1G091320.2	Barley	plastid	95.5	95.5
Zm00001d012221_P001	Maize	plastid	86.77	86.32
EES01858	Sorghum	mitochondrion, plastid	86.51	86.05
Os01t0880800-01	Rice	plastid	84.92	84.25
GSMUA_Achr8P32640_001	Banana	cytosol	59.26	82.05
GSMUA_Achr7P03060_001	Banana	plastid	61.9	74.29
KRH15948	Soybean	cytosol, nucleus	62.7	70.33
Solyc06g059700.2.1	Tomato	cytosol	25.66	68.31
VIT_18s0001g15460.t01	Wine grape	plastid	69.58	67.61
VIT_10s0003g04810.t01	Wine grape	cytosol	20.9	65.83
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	45.24	65.77
AT1G43800.1	Thale cress	plastid	66.67	64.45
TraesCS2A01G280700.2	Wheat	plastid	65.61	63.27
KRH18113	Soybean	plastid	61.38	61.38
PGSC0003DMT400013389	Potato	cytosol	41.8	61.0
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	20.63	60.94
Solyc06g054670.1.1	Tomato	plastid	60.32	60.16
Solyc01g009960.2.1	Tomato	plastid	47.62	59.8
TraesCS5A01G123600.2	Wheat	plastid	60.58	59.48
PGSC0003DMT400079085	Potato	plastid	60.58	59.17
PGSC0003DMT400079075	Potato	plastid	60.32	58.46
PGSC0003DMT400095159	Potato	plastid	58.47	57.55
Solyc06g059720.2.1	Tomato	plastid	58.2	56.85
Solyc06g059710.2.1	Tomato	plastid	57.67	56.33
TraesCS4A01G326700.1	Wheat	plastid	59.26	54.77
KRH18114	Soybean	cytosol	54.23	54.67
TraesCS3A01G426800.3	Wheat	plastid	64.02	50.21
TraesCS7A01G196500.1	Wheat	plastid	53.7	50.0
TraesCS2A01G075300.1	Wheat	mitochondrion	52.38	48.53
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	33.86	47.94
TraesCS3A01G418000.1	Wheat	plastid	52.38	47.26
TraesCS5A01G237800.1	Wheat	plastid	50.0	46.44
TraesCS5A01G237000.1	Wheat	plastid	49.47	46.29
PGSC0003DMT400079080	Potato	plastid	26.72	45.91
TraesCS5A01G236800.1	Wheat	plastid	48.94	45.79
TraesCS2A01G075500.1	Wheat	plastid	51.06	43.37
TraesCS2A01G075400.1	Wheat	mitochondrion	50.53	41.89

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405
PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS3A01G408700
EnsemblPlants:TraesCS3A01G408700.1	TIGR:cd01050	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:653416958..653418172

Molecular Weight (calculated)

42336.6 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.330

Length

378 amino acids

Sequence
(BLAST)

001: MQAQGLLRVP GHPAAARPLP RRQCRVSAVA AAAPSVQRGV THSMPPEKAE VFQSLRGWAA GSLLPLLRPV EDIWQPADFL PDSSSEMFEH EVRELRARAA
101: ALPDDYFVVL VGDMVTEEAL PTYQTMINTL DGVRDETGAS ACPWAVWTRA WTAEENRHGD VLNKYMYLSG RVDMRMVEKT VQYLIGSGMD PRTENNPYLG
201: FVYTSFQERA TAVSHGNTAR LARAHGDDVL ARTCGTIAAD EKRHETAYSR IVEQLLQLDS DGAMLAIADM MRKRITMPAH LMHDGSDMSL FEHFASVAQR
301: LGVYTAQDYT DIVEFLVKRW KLEALEGGLS GEGRRARDFV CGLAPRMRRA AERAADRAKK DEPRKVRFSW IFDREVVV

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.