Factsheet for PGSC0003DMT400079085

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	62.27	92.69
PGSC0003DMT400079075	Potato	plastid	93.28	92.56
Solyc06g054670.1.1	Tomato	plastid	87.34	89.18
PGSC0003DMT400095159	Potato	plastid	81.14	81.77
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	26.1	78.91
PGSC0003DMT400013389	Potato	cytosol	50.65	75.68
GSMUA_Achr8P32640_001	Banana	cytosol	48.32	68.5
KRH15948	Soybean	cytosol, nucleus	58.4	67.06
PGSC0003DMT400079080	Potato	plastid	36.95	65.0
VIT_18s0001g15460.t01	Wine grape	plastid	63.82	63.5
EES01858	Sorghum	mitochondrion, plastid	62.02	63.16
GSMUA_Achr7P03060_001	Banana	plastid	50.9	62.54
VIT_10s0003g04810.t01	Wine grape	cytosol	19.38	62.5
Zm00001d012221_P001	Maize	plastid	61.24	62.37
KRH18113	Soybean	plastid	59.95	61.38
TraesCS3D01G403800.1	Wheat	plastid	60.21	60.99
Os01t0880800-01	Rice	plastid	59.95	60.89
HORVU3Hr1G091320.2	Barley	plastid	59.43	60.85
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	59.17	60.58
AT1G43800.1	Thale cress	plastid	59.69	59.08
PGSC0003DMT400041874	Potato	plastid	58.91	58.02
PGSC0003DMT400002555	Potato	plastid	58.4	57.51
PGSC0003DMT400042118	Potato	plastid	56.85	55.42
KRH18114	Soybean	cytosol	51.68	53.33
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	33.33	48.31
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	17.83	47.26

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:102592490	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
UniProt:M1D170	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400030776	PGSC:PGSC0003DMG400030776	EnsemblPlants:PGSC0003DMT400079085	PIRSF:PIRSF000346
PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI0002955823	RefSeq:XP_006356733.1
SEG:seg	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG400030776]

Coordinates

chr6:+:41096477..41098427

Molecular Weight (calculated)

44332.8 Da

IEP (calculated)

7.935

GRAVY (calculated)

-0.280

Length

387 amino acids

Sequence
(BLAST)

001: MMQTTSFSQF NIPSIVGASP PPTTTILRRK TTSSRRLSPV LAVASPTSRH QVTHSMPPEK LELFKSLEPW VSENILPLRK PVEKCWQPIE FLPNPSQGPE
101: QFEEEVRALR QRVLGLSDEY FVMLVGNMLT EDALPTYQTV INTFDGVRDE TGSSPCPWAI WTRAWTAEEN RHGDLLRTYL YLSGRVDMLM VDKTLQYLIG
201: AGIDIGVENN PYLGYVYTSF QERATCLSHG NMARLATEGG DPMLARICGT IGADEKRHEH VYTRIVEKLL EVDPNATMLA IAHMMKKKII MPMHLMYDGQ
301: DLNIFEHFSA ISERQGIYTS RHYAEILEFF IIRWKLEKLE GLIAEARRAQ DYVCGLPPRV RKLESRAKKI EPRQVKFSWI FNKQVIV

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.