CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012221_P001	Maize	plastid	95.26	95.26
Os01t0880800-01	Rice	plastid	89.21	88.98
TraesCS3D01G403800.1	Wheat	plastid	87.11	86.65
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	86.05	86.51
HORVU3Hr1G091320.2	Barley	plastid	85.26	85.71
GSMUA_Achr8P32640_001	Banana	cytosol	60.79	84.62
GSMUA_Achr7P03060_001	Banana	plastid	63.42	76.51
KRH15948	Soybean	cytosol, nucleus	63.95	72.11
Solyc06g059700.2.1	Tomato	cytosol	26.58	71.13
VIT_10s0003g04810.t01	Wine grape	cytosol	21.84	69.17
VIT_18s0001g15460.t01	Wine grape	plastid	70.0	68.38
AT1G43800.1	Thale cress	plastid	69.74	67.77
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	46.05	67.31
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	21.84	64.84
PGSC0003DMT400013389	Potato	cytosol	43.95	64.48
EES10606	Sorghum	plastid	66.05	64.03
KRH18113	Soybean	plastid	62.63	62.96
Solyc01g009960.2.1	Tomato	plastid	49.74	62.79
Solyc06g054670.1.1	Tomato	plastid	62.37	62.53
PGSC0003DMT400079085	Potato	plastid	63.16	62.02
PGSC0003DMT400079075	Potato	plastid	63.16	61.54
PGSC0003DMT400095159	Potato	plastid	61.84	61.2
EES04113	Sorghum	plastid	63.16	60.45
Solyc06g059720.2.1	Tomato	plastid	61.32	60.21
Solyc06g059710.2.1	Tomato	plastid	60.0	58.91
KRH18114	Soybean	cytosol	55.79	56.53
KXG30261	Sorghum	plastid	61.84	56.49
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	35.0	49.81
KXG38794	Sorghum	plastid	51.58	49.37
KXG24679	Sorghum	plastid	54.47	48.94
PGSC0003DMT400079080	Potato	plastid	27.89	48.18
KXG35977	Sorghum	plastid	48.95	44.93
EER88838	Sorghum	plastid	47.89	44.39
EER91728	Sorghum	mitochondrion, plastid	48.42	42.89
OQU92381	Sorghum	plastid	50.53	42.76
OQU85014	Sorghum	plastid, vacuole	25.79	25.99

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	EntrezGene:8061464	UniProt:C5XRE8	EnsemblPlants:EES01858	ProteinID:EES01858
ProteinID:EES01858.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like	EnsemblPlantsGene:SORBI_3003G377100
SUPFAM:SSF47240	UniParc:UPI0001A84FB8	RefSeq:XP_002456738.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:69144515..69145942

Molecular Weight (calculated)

42718.1 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.352

Length

380 amino acids

Sequence
(BLAST)

001: MQAHGIAVRA RAPVAPAHAR RRRQCRVSAT AAVAAPAARA RVTHSMPPEK AEVFRSLEGW AARSLLPLLK PVEECWQPTD FLPDSSSEMF EHEVRELRAR
101: AAGLPDEYFV VLVGDMITEE ALPTYQTMIN TLDGVRDETG ASACPWAVWT RAWTAEENRH GDILGKYMYL SGRVDMRMVE KTVQYLIGSG MDPGTENNPY
201: LGFVYTSFQE RATAVSHGNT ARLARAHGDD VLARTCGTIA ADEKRHETAY GRIVEQLLRL DPEGAVLAIA DMMRKRITMP AHLMHDGRDM NLFEHFAAVA
301: QRLGVYTARD YADIVEFLVK RWELETLESG LTGEGRRARD FVCGLAPRMR RAAERAEDRA KKDEPRMVKF SWIFDREAVV

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.