CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

nucleus 1
plastid 3
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g02500.t01	Wine grape	cytosol	7.16	39.71
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	6.1	37.7
OQU92381	Sorghum	plastid	35.01	29.4
EES04113	Sorghum	plastid	27.59	26.2
EES10606	Sorghum	plastid	27.06	26.02
EER88838	Sorghum	plastid	28.12	25.85
EES01858	Sorghum	mitochondrion, plastid	25.99	25.79
KXG24679	Sorghum	plastid	28.38	25.3
KXG30261	Sorghum	plastid	27.06	24.52
EER91728	Sorghum	mitochondrion, plastid	27.59	24.24
KXG38794	Sorghum	plastid	24.67	23.43
KXG35977	Sorghum	plastid	25.2	22.95
Zm00001d025262_P001	Maize	mitochondrion, plastid	16.71	14.86

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	UniProt:A0A1Z5RMQ0	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0045300	GO:GO:0055114
InterPro:IPR012348	EnsemblPlants:OQU85014	ProteinID:OQU85014	ProteinID:OQU85014.1	PFAM:PF03405	PANTHER:PTHR31155
PANTHER:PTHR31155:SF14	InterPro:RNR-like	EnsemblPlantsGene:SORBI_3004G157550	SUPFAM:SSF47240	SUPFAM:SSF53756	TMHMM:TMhelix
UniParc:UPI000B8B9BC0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49975637..49976991

Molecular Weight (calculated)

39808.2 Da

IEP (calculated)

5.054

GRAVY (calculated)

-0.173

Length

377 amino acids

Sequence
(BLAST)

001: MPQPHIMVVP YPGSGNINPA LQLALLLCYH GIFITFVVTG HNLRRAQAAA TEGAVSSCDD AFRIETIPDG LVFADPNDDR AFAEELAELW ATTACVPDDV
101: LVCLVGNMVT EEALPTMFNR TDGVGDDTGT SAFPWARWIR GWTAEENRML SKICGVVAGD ERRHEAAYTK ASSELFGVDP DGMVRALAYV MLRKPSGARR
201: RAGGWAFQKL SVAKGGGGDD EAGCPAPAPG PAEQEAEEGR RPEGPARSAI SRVAPHAVGL ELDAKYEAGA SRSAATGRQL VMIGGLLLLR AAAAREAAAA
301: VLALAVAEEA RARRAPAGPG PTETGAPPSI SLVEEVAEPL DPTRPRSSIS HDWKGKKDII LPGAYVSDPL NGRKQTE

Best Arabidopsis Sequence Match ( AT3G02610.2 )
(BLAST)

001: MKMALLLNST ITVAMKQNPL VAVSFPRTTC LGSSFSPPRL LRVSCVATNP SKTSEETDKK KFRPIKEVPN QVTHTITQEK LEIFKSMENW AQENLLSYLK
101: PVEASWQPQD FLPETNDEDR FYEQVKELRD RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLTPWAVW VRAWTAEENR HGDLLNKYLY
201: LSGRVDMRHV EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN TAKLATTYGD TTLAKICGTI AADEKRHETA YTRIVEKLFE IDPDGTVQAL
301: ASMMRKRITM PAHLMHDGRD DDLFDHYAAV AQRIGVYTAT DYAGILEFLL RRWEVEKLGM GLSGEGRRAQ DYLCTLPQRI RRLEERANDR VKLASKSKPS
401: VSFSWIYGRE VEL

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.