CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025170_P001	Maize	plastid	98.47	98.47
Zm00001d004019_P001	Maize	plastid	98.21	98.21
Os04t0379900-01	Rice	plastid	91.58	92.05
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	36.99	88.41
TraesCS2D01G279500.2	Wheat	golgi, plastid	87.5	87.5
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	35.2	87.34
TraesCS2A01G280700.2	Wheat	plastid	87.24	87.24
TraesCS2B01G298000.1	Wheat	plastid	87.24	87.24
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	87.76	77.3
EES04113	Sorghum	plastid	77.55	76.57
VIT_00s0499g00030.t01	Wine grape	plastid	76.28	76.08
GSMUA_Achr7P22860_001	Banana	plastid	69.9	75.9
Solyc06g053480.2.1	Tomato	plastid	76.79	75.82
PGSC0003DMT400042118	Potato	plastid	76.79	75.82
KRH71270	Soybean	endoplasmic reticulum, nucleus	75.0	75.19
CDY17916	Canola	plastid	76.28	74.94
PGSC0003DMT400041874	Potato	plastid	75.0	74.81
Solyc11g008680.1.1	Tomato	plastid	75.0	74.81
Solyc03g063110.2.1	Tomato	plastid	74.49	74.3
PGSC0003DMT400002555	Potato	plastid	74.49	74.3
AT2G43710.1	Thale cress	plastid	75.77	74.06
VIT_05s0094g00750.t01	Wine grape	plastid	60.97	73.99
CDX79807	Canola	plastid	75.51	73.82
Bra004778.1-P	Field mustard	plastid	75.51	73.82
CDY44250	Canola	plastid	75.0	73.68
KRH50195	Soybean	plastid	75.51	73.63
Bra000321.1-P	Field mustard	plastid	74.74	73.62
CDX83464	Canola	plastid	74.74	73.62
GSMUA_Achr8P08750_001	Banana	plastid	65.82	73.09
VIT_12s0034g00180.t01	Wine grape	cytosol	19.39	71.7
KXG30261	Sorghum	plastid	72.7	68.51
EES01858	Sorghum	mitochondrion, plastid	64.03	66.05
GSMUA_Achr5P25160_001	Banana	plastid	66.33	65.99
VIT_12s0034g00190.t01	Wine grape	extracellular	24.74	58.08
KXG38794	Sorghum	plastid	50.0	49.37
KXG24679	Sorghum	plastid	49.49	45.86
EER88838	Sorghum	plastid	47.7	45.61
KXG35977	Sorghum	plastid	47.19	44.69
OQU92381	Sorghum	plastid	49.23	42.98
EER91728	Sorghum	mitochondrion, plastid	46.43	42.42
OQU85014	Sorghum	plastid, vacuole	26.02	27.06

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	EntrezGene:8070798	UniProt:C5YED4	EnsemblPlants:EES10606	ProteinID:EES10606
ProteinID:EES10606.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114
InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11
InterPro:RNR-like	EnsemblPlantsGene:SORBI_3006G048700	SUPFAM:SSF47240	unigene:Sbi.14451	UniParc:UPI000189D892	RefSeq:XP_002446278.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:34559165..34562646

Molecular Weight (calculated)

44738.4 Da

IEP (calculated)

7.020

GRAVY (calculated)

-0.466

Length

392 amino acids

Sequence
(BLAST)

001: MALRASPVSH GAAAAPLPPF ARRRMARGVV VAMASTINRV KTVKEPYTPP REVHRQITHS LPPQKREIFD SLQPWAKDNL LNLLKPVEKS WQPQDFLPEP
101: SSDGFYDEVK ELRERANEIP DEYFVCLVGD MVTEEALPTY QTMLNTLDGV RDETGASPTT WAVWTRAWTA EENRHGDLLN KYMYLTGRVD MKQIEKTIQY
201: LIGSGMDPGT ENNPYLGFLY TSFQERATFV SHGNTARHAK EYGDLKLAQI CGTIAADEKR HETAYTKIVE KLFEIDPDYT VLAFADMMRK KITMPAHLMY
301: DGKDDNLFEH FSAVAQRLGV YTAKDYADIL EFLVQRWKVA DLTGLSGEGR RAQDFVCTLA PRIRRLDERA QARAKQAPVI PFSWIYDRKV QL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.