Factsheet for Zm00001d004019_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10606	Sorghum	plastid	98.21	98.21
Zm00001d025170_P001	Maize	plastid	96.94	96.94
Os04t0379900-01	Rice	plastid	90.05	90.51
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.97	85.98
TraesCS2D01G279500.2	Wheat	golgi, plastid	85.97	85.97
TraesCS2A01G280700.2	Wheat	plastid	85.71	85.71
TraesCS2B01G298000.1	Wheat	plastid	85.71	85.71
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	34.44	85.44
Zm00001d012033_P002	Maize	mitochondrion	77.04	77.04
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	86.22	75.96
GSMUA_Achr7P22860_001	Banana	plastid	69.9	75.9
VIT_00s0499g00030.t01	Wine grape	plastid	75.51	75.32
Solyc11g008680.1.1	Tomato	plastid	75.26	75.06
PGSC0003DMT400042118	Potato	plastid	75.51	74.56
Solyc06g053480.2.1	Tomato	plastid	75.51	74.56
PGSC0003DMT400041874	Potato	plastid	74.74	74.55
KRH71270	Soybean	endoplasmic reticulum, nucleus	74.23	74.42
PGSC0003DMT400002555	Potato	plastid	73.98	73.79
Solyc03g063110.2.1	Tomato	plastid	73.98	73.79
CDY17916	Canola	plastid	75.0	73.68
VIT_05s0094g00750.t01	Wine grape	plastid	60.46	73.37
KRH50195	Soybean	plastid	74.74	72.89
AT2G43710.1	Thale cress	plastid	74.49	72.82
Zm00001d042344_P002	Maize	plastid	76.53	72.82
CDX79807	Canola	plastid	74.23	72.57
Bra004778.1-P	Field mustard	plastid	74.23	72.57
GSMUA_Achr8P08750_001	Banana	plastid	65.31	72.52
CDY44250	Canola	plastid	73.72	72.43
Bra000321.1-P	Field mustard	plastid	73.47	72.36
CDX83464	Canola	plastid	73.47	72.36
VIT_12s0034g00180.t01	Wine grape	cytosol	19.39	71.7
GSMUA_Achr5P25160_001	Banana	plastid	66.58	66.24
Zm00001d012221_P001	Maize	plastid	64.03	66.05
Zm00001d050552_P001	Maize	plastid	72.45	64.55
VIT_12s0034g00190.t01	Wine grape	extracellular	24.74	58.08
Zm00001d030165_P001	Maize	cytosol	48.47	56.55
Zm00001d024273_P001	Maize	plastid	50.26	46.46
Zm00001d014498_P001	Maize	plastid	47.45	45.59
Zm00001d021059_P001	Maize	plastid	45.92	44.01
Zm00001d030328_P001	Maize	mitochondrion	44.13	39.86
Zm00001d025262_P001	Maize	mitochondrion, plastid	25.0	23.11

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	UniProt:A0A1D6ECZ3	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
ProteinID:ONM18170.1	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI000189D7FC	EnsemblPlantsGene:Zm00001d004019	EnsemblPlants:Zm00001d004019_P001	EnsemblPlants:Zm00001d004019_T001	SEG:seg

Description

stearoyl-acyl-carrier-protein desaturase5 stearoyl-acyl-carrier-protein desaturase5

Coordinates

chr2:+:76032746..76036381

Molecular Weight (calculated)

44724.5 Da

IEP (calculated)

7.676

GRAVY (calculated)

-0.477

Length

392 amino acids

Sequence
(BLAST)

001: MALRVSPVSH GAAAAPLPPL ARRRMARGVV VAMASTINRV KTVKEPYTPP REVHRQITHS LPPQKREIFD SLQPWAKDNL LNLLKPVEKS WQPQDFLPEP
101: SSDGFYDEVK ELRERANEIP DEYFVCLVGD MVTEEALPTY QTMLNTLDGV RDETGASPTT WAVWTRAWTA EENRHGDLLN KYMYLTGRVD MKQIEKTIQY
201: LIGSGMDPGT ENNPYLGFLY TSFQERATFV SHGNTARHAK EYGDLKLAQI CGTIAADEKR HETAYTKIVE KLFETDPDYT VLAFSDMMRK KITMPAHLMY
301: DGKDDNLFEH FSAVAQRMGV YTAKDYADIL EFLVQRWKVA DLTGLSGEGR RAQDFVCTLA PRIRRLDERA RARAKQAPVI PFSWIYGRKV QL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.