Factsheet for Zm00001d030328_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91728	Sorghum	mitochondrion, plastid	87.56	88.58
Os08t0199400-01	Rice	plastid	64.29	66.59
Zm00001d024273_P001	Maize	plastid	59.22	60.61
TraesCS2D01G074000.1	Wheat	plastid	54.38	58.27
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	35.71	53.08
Zm00001d030165_P001	Maize	cytosol	41.01	52.98
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	54.15	52.34
TraesCS2D01G074100.1	Wheat	mitochondrion	53.92	51.32
Zm00001d012221_P001	Maize	plastid	41.71	47.63
Zm00001d021059_P001	Maize	plastid	44.01	46.7
Zm00001d014498_P001	Maize	plastid	43.32	46.08
Bra039178.1-P	Field mustard	plastid	41.01	45.06
CDY26509	Canola	plastid	41.71	44.91
CDX69460	Canola	plastid	41.71	44.91
Bra008632.1-P	Field mustard	plastid	41.71	44.91
AT5G16230.1	Thale cress	plastid	41.47	44.89
AT3G02610.2	Thale cress	plastid	42.17	44.31
CDY57537	Canola	plastid	41.71	44.25
Zm00001d004019_P001	Maize	plastid	39.86	44.13
Zm00001d025170_P001	Maize	plastid	39.86	44.13
GSMUA_Achr5P25190_001	Banana	mitochondrion	6.68	43.94
CDY43232	Canola	plastid	41.24	43.77
Zm00001d012033_P002	Maize	mitochondrion	39.4	43.62
AT3G02620.2	Thale cress	plastid	40.55	43.35
Zm00001d042344_P002	Maize	plastid	40.32	42.48
Zm00001d050552_P001	Maize	plastid	41.47	40.91
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	13.59	40.41
Zm00001d025262_P001	Maize	mitochondrion, plastid	15.9	16.27

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:103638337	MapMan:5.1.7.1	UniProt:A0A1D6KBW9	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114
InterPro:IPR012348	ProteinID:ONM00797.1	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF15
InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI000221C82C	EnsemblPlantsGene:Zm00001d030328	EnsemblPlants:Zm00001d030328_P001	EnsemblPlants:Zm00001d030328_T001
SEG:seg	:	:	:	:	:

Description

stearoyl-acyl-carrier-protein desaturase4 stearoyl-acyl-carrier-protein desaturase4

Coordinates

chr1:-:122695681..122697988

Molecular Weight (calculated)

48077.6 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.273

Length

434 amino acids

Sequence
(BLAST)

001: MIMASAFYKF GYQSCKLSGP GACKQPTATA AASGGNGVHA LATITRRNWR CRNMATTASG TTTMAVAGRR REKKDDVVEG EDEWRSYLAP ERLEMLRQME
101: PWVEEHVLPL LKPVEASWQP SDLLPDPANL GSDGFHAACL ELRAAAAGVP DDLLVCLVAN MITEEALPSY PSGLNRLEVV RDATGADATA WARWIRGWSA
201: EENRHGDVLN RYMHLSGRFH MREVERTVQR LIRDGVIVHA PASPFHGFVY VAFQERATAI AHGNTARLVG ARGAGDAALA RICGTVAADE KRHEAAYTRV
301: VGKFFEADPD AAVRAMAYMM RRRIDMPTVL INDGRHSSGD FYARFVAIAQ QAGTYTVSDY RAILEHFIRQ WGVEELAAGL TGEGRRARDY LCALPHKIKR
401: MEEKAHDRAV KAQKKPTPIP INWIFDRTIP VILP

Best Arabidopsis Sequence Match ( AT3G02610.1 )
(BLAST)

001: MALLLNSTIT VAMKQNPLVA VSFPRTTCLG SSFSPPRLLR VSCVATNPSK TSEETDKKKF RPIKEVPNQV THTITQEKLE IFKSMENWAQ ENLLSYLKPV
101: EASWQPQDFL PETNDEDRFY EQVKELRDRT KEIPDDYFVV LVGDMITEEA LPTYQTTLNT LDGVKDETGG SLTPWAVWVR AWTAEENRHG DLLNKYLYLS
201: GRVDMRHVEK TIQYLIGSGM DSKFENNPYN GFIYTSFQER ATFISHGNTA KLATTYGDTT LAKICGTIAA DEKRHETAYT RIVEKLFEID PDGTVQALAS
301: MMRKRITMPA HLMHDGRDDD LFDHYAAVAQ RIGVYTATDY AGILEFLLRR WEVEKLGMGL SGEGRRAQDY LCTLPQRIRR LEERANDRVK LASKSKPSVS
401: FSWIYGREVE L

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.