Factsheet for TraesCS2D01G074000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
peroxisome 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G075300.1	Wheat	mitochondrion	94.81	94.12
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	84.94	76.61
TraesCS2D01G074100.1	Wheat	mitochondrion	85.68	76.1
HORVU2Hr1G006990.1	Barley	plastid	72.84	72.13
Os08t0200100-01	Rice	plastid	66.91	67.08
KXG24679	Sorghum	plastid	67.16	64.3
Zm00001d024273_P001	Maize	plastid	65.68	62.74
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	43.7	60.62
Os08t0199400-01	Rice	plastid	58.77	56.8
GSMUA_Achr5P25190_001	Banana	mitochondrion	9.14	56.06
EER91728	Sorghum	mitochondrion, plastid	59.01	55.71
Zm00001d030328_P001	Maize	mitochondrion	58.27	54.38
TraesCS3D01G421700.1	Wheat	plastid	51.6	53.32
TraesCS2D01G279500.2	Wheat	golgi, plastid	51.6	53.32
TraesCS5D01G131500.1	Wheat	plastid	49.88	52.88
Bra039178.1-P	Field mustard	plastid	50.37	51.65
TraesCS3D01G403800.1	Wheat	plastid	48.4	51.31
TraesCS5D01G548700.1	Wheat	plastid	49.38	51.15
AT5G16230.1	Thale cress	plastid	50.62	51.12
AT3G02610.2	Thale cress	plastid	52.1	51.09
CDY26509	Canola	plastid	50.37	50.62
CDX69460	Canola	plastid	50.37	50.62
Bra008632.1-P	Field mustard	plastid	50.37	50.62
TraesCS3D01G413500.1	Wheat	plastid	51.85	50.24
CDY57537	Canola	plastid	50.62	50.12
AT3G02620.2	Thale cress	plastid	50.12	50.0
CDY43232	Canola	plastid	50.37	49.88
Os03t0741000-00	Rice	plastid	36.54	49.33
TraesCS5D01G244700.1	Wheat	plastid	48.64	48.4
Os06t0503800-00	Rice	plastid	26.91	44.67
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	15.06	41.78

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF10	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS2D01G074000	EnsemblPlants:TraesCS2D01G074000.1	TIGR:cd01050

Description

No Description!

Coordinates

chr2D:-:31560127..31561454

Molecular Weight (calculated)

45436.1 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.339

Length

405 amino acids

Sequence
(BLAST)

001: MAASWLLKHP CPPERPWTST RNATGLQLIT ITYRRTTCTG RSAAVAVKHQ EEGTDDEWLA YLEPAKLEVF DQLEPWAEAN VVPLLKPAEV AWQPTDLLPD
101: PASLGADGFH AACCDIRERA AGLPDAHLVC LVGNMVTEEA LPSYQSMANR FEAVHDLTGS SGTAWARWTR GWSAEENRHG DVLNRYLYLS GRVDMRQVER
201: TIHNLIRSGM VLNAARSPYH GFIYVAFQER ATFISHGNTA RRAKEHGDVA LARICGAIAA DEKRHELAYT RIVAKLFEID PDGAVRALAY MMRRRIVMPA
301: SLMTDGRDDD LFAHYGAVAQ QAGIYTASDY RGILEHLIKQ WGVEELVAAG LSDEGRRARD YVCALPQKIR RLEEKAHERR RHKAQPTTPI PFSWIYDRPV
401: NITVA

Best Arabidopsis Sequence Match ( AT3G02610.1 )
(BLAST)

001: MALLLNSTIT VAMKQNPLVA VSFPRTTCLG SSFSPPRLLR VSCVATNPSK TSEETDKKKF RPIKEVPNQV THTITQEKLE IFKSMENWAQ ENLLSYLKPV
101: EASWQPQDFL PETNDEDRFY EQVKELRDRT KEIPDDYFVV LVGDMITEEA LPTYQTTLNT LDGVKDETGG SLTPWAVWVR AWTAEENRHG DLLNKYLYLS
201: GRVDMRHVEK TIQYLIGSGM DSKFENNPYN GFIYTSFQER ATFISHGNTA KLATTYGDTT LAKICGTIAA DEKRHETAYT RIVEKLFEID PDGTVQALAS
301: MMRKRITMPA HLMHDGRDDD LFDHYAAVAQ RIGVYTATDY AGILEFLLRR WEVEKLGMGL SGEGRRAQDY LCTLPQRIRR LEERANDRVK LASKSKPSVS
401: FSWIYGREVE L

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.