Factsheet for Os08t0200100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G040140.1	Barley	cytosol, nucleus, peroxisome	68.81	86.6
TraesCS7A01G196500.1	Wheat	plastid	78.71	78.33
TraesCS7B01G102300.1	Wheat	plastid	78.71	78.13
KXG24679	Sorghum	plastid	71.53	68.32
Zm00001d024273_P001	Maize	plastid	70.3	66.98
TraesCS2D01G074000.1	Wheat	plastid	67.08	66.91
Os08t0199400-01	Rice	plastid	64.11	61.81
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	65.59	59.02
TraesCS2D01G074100.1	Wheat	mitochondrion	66.09	58.55
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.08	58.22
Os03t0741000-00	Rice	plastid	43.07	58.0
GSMUA_Achr5P25190_001	Banana	mitochondrion	9.41	57.58
Os03t0423300-01	Rice	plastid	54.46	52.63
Os01t0880800-01	Rice	plastid	49.26	52.23
Os06t0503800-00	Rice	plastid	31.19	51.64
Os04t0379900-01	Rice	plastid	48.27	50.0
AT5G16230.1	Thale cress	plastid	48.02	48.38
CDX69460	Canola	plastid	48.02	48.14
Bra008632.1-P	Field mustard	plastid	48.02	48.14
CDY26509	Canola	plastid	48.02	48.14
Bra039178.1-P	Field mustard	plastid	47.03	48.1
AT3G02610.2	Thale cress	plastid	49.01	47.94
AT3G02620.2	Thale cress	plastid	48.02	47.78
Os01t0919900-01	Rice	plastid	47.28	47.75
Os02t0504800-01	Rice	plastid	37.62	47.2
CDY57537	Canola	plastid	47.28	46.7
CDY43232	Canola	plastid	47.03	46.45
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	14.6	40.41

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:4344897	MapMan:5.1.7.1	EMBL:AK241294	ProteinID:BAD03218.1	ProteinID:BAD03587.1
ProteinID:BAF23123.1	ProteinID:BAT04252.1	ProteinID:EAZ41833.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	EnsemblPlantsGene:Os08g0200100	EnsemblPlants:Os08t0200100-01	PFAM:PF03405	PIRSF:PIRSF000346
PANTHER:PTHR31155	PANTHER:PTHR31155:SF10	UniProt:Q6Z1I5	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI0000226063
RefSeq:XP_015649776.1	SEG:seg	:	:	:	:

Description

Ribonucleotide reductase-related domain containing protein. (Os08t0200100-01)

Coordinates

chr8:-:5787597..5789135

Molecular Weight (calculated)

44831.4 Da

IEP (calculated)

7.414

GRAVY (calculated)

-0.306

Length

404 amino acids

Sequence
(BLAST)

001: MAASATTSTL AVTMFGYPNR NCHLKPPATA TLRFWRSAAA AAVATSRREA EAEEADEVRR CLAPARLEVL EQMEPWVEAH VLPLLKPAEE AWQPADLVPD
101: AAALGADGFH AACVELRGRA AGVPDAHLVC LVGNMVTEEA LPTYQSMANR FESARDVTGA DATAWARWIR GWSAEENRHG DVLNRYMYLS GRLDMRQVER
201: TVHRLIGSGM AMHAPASPYH GFIYVAFQER ATAISHGNTA RNVRAHGDDA LARICGAIAS DEKRHEAAYT RVVERLLEAD PDTTVRALAY MMRRRITMPA
301: ALMDDGRDAD LFAHYAAAAQ QAGTYTASDY RGILEHLIRR WRVAELEAGL SGEGRRARDY VCALPQKIRR MEEKAHDRAA QMRKRPTAIP FSWIFDKPVD
401: LMLP

Best Arabidopsis Sequence Match ( AT3G02610.2 )
(BLAST)

001: MKMALLLNST ITVAMKQNPL VAVSFPRTTC LGSSFSPPRL LRVSCVATNP SKTSEETDKK KFRPIKEVPN QVTHTITQEK LEIFKSMENW AQENLLSYLK
101: PVEASWQPQD FLPETNDEDR FYEQVKELRD RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLTPWAVW VRAWTAEENR HGDLLNKYLY
201: LSGRVDMRHV EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN TAKLATTYGD TTLAKICGTI AADEKRHETA YTRIVEKLFE IDPDGTVQAL
301: ASMMRKRITM PAHLMHDGRD DDLFDHYAAV AQRIGVYTAT DYAGILEFLL RRWEVEKLGM GLSGEGRRAQ DYLCTLPQRI RRLEERANDR VKLASKSKPS
401: VSFSWIYGRE VEL

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.