Factsheet for Os08t0199400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91728	Sorghum	mitochondrion, plastid	68.02	66.43
Zm00001d030328_P001	Maize	mitochondrion	66.59	64.29
Os08t0200100-01	Rice	plastid	61.81	64.11
TraesCS2D01G074000.1	Wheat	plastid	56.8	58.77
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.99	53.08
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	56.8	53.01
TraesCS2D01G074100.1	Wheat	mitochondrion	56.8	52.19
Os01t0880800-01	Rice	plastid	45.35	49.87
Os03t0423300-01	Rice	plastid	48.21	48.33
Os04t0379900-01	Rice	plastid	44.63	47.95
Os02t0504800-01	Rice	plastid	36.75	47.83
Os03t0741000-00	Rice	plastid	33.65	47.0
GSMUA_Achr5P25190_001	Banana	mitochondrion	7.16	45.45
Bra039178.1-P	Field mustard	plastid	42.24	44.81
AT3G02610.2	Thale cress	plastid	43.91	44.55
AT5G16230.1	Thale cress	plastid	42.48	44.39
CDY26509	Canola	plastid	42.48	44.17
CDX69460	Canola	plastid	42.48	44.17
Bra008632.1-P	Field mustard	plastid	42.48	44.17
CDY57537	Canola	plastid	42.72	43.77
Os01t0919900-01	Rice	plastid	41.77	43.75
AT3G02620.2	Thale cress	plastid	42.24	43.6
CDY43232	Canola	plastid	42.24	43.28
Os06t0503800-00	Rice	plastid	24.11	41.39
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	14.08	40.41

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:4344895	MapMan:5.1.7.1	EMBL:AK105852	ProteinID:BAD03577.1	ProteinID:BAF23121.1
ProteinID:BAT04247.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
EnsemblPlantsGene:Os08g0199400	EnsemblPlants:Os08t0199400-01	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF15
UniProt:Q0J7E4	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI0000DD9411	RefSeq:XP_015650772.1	SEG:seg

Description

Similar to Stearoyl-acyl carrier protein desaturse (EC 1.14.99.6) (Fragment). (Os08t0199400-01)

Coordinates

chr8:-:5751863..5753741

Molecular Weight (calculated)

46103.2 Da

IEP (calculated)

7.800

GRAVY (calculated)

-0.211

Length

419 amino acids

Sequence
(BLAST)

001: MAATATMAMP LANRLRCKPN TNSSSPSRTL FGRRVTMISS SRWGSAVSGS AIMSAAADVA AAVRREEDEE MRSYLSPEKL EVLTQMEPWV EEHVLPLLKP
101: VEAAWQPSDL LPDPAVLGGE GFHAACAELR ERAAGVPDLL LVCLVANMVT EEALPTYQSS LNRVRAVGDL TGADATAWAR WIRGWSAEEN RHGDVLNRYM
201: YLSGRFDMAE VERAVHRLIR SGMAVDPPCS PYHAFVYTAF QERATAVAHG NTARLVGARG HGDAALARVC GTVAADEKRH EAAYTRIVSR LLEADPDAGV
301: RAVARMLRRG VAMPTSPISD GRRDDLYACV VSLAEQAGTY TVSDYCSIVE HLVREWRVEE LAAGLSGEGR RARDYVCELP QKIRRMKEKA HERAVKAQKK
401: PISIPINWIF DRHVSVMLP

Best Arabidopsis Sequence Match ( AT3G02610.1 )
(BLAST)

001: MALLLNSTIT VAMKQNPLVA VSFPRTTCLG SSFSPPRLLR VSCVATNPSK TSEETDKKKF RPIKEVPNQV THTITQEKLE IFKSMENWAQ ENLLSYLKPV
101: EASWQPQDFL PETNDEDRFY EQVKELRDRT KEIPDDYFVV LVGDMITEEA LPTYQTTLNT LDGVKDETGG SLTPWAVWVR AWTAEENRHG DLLNKYLYLS
201: GRVDMRHVEK TIQYLIGSGM DSKFENNPYN GFIYTSFQER ATFISHGNTA KLATTYGDTT LAKICGTIAA DEKRHETAYT RIVEKLFEID PDGTVQALAS
301: MMRKRITMPA HLMHDGRDDD LFDHYAAVAQ RIGVYTATDY AGILEFLLRR WEVEKLGMGL SGEGRRAQDY LCTLPQRIRR LEERANDRVK LASKSKPSVS
401: FSWIYGREVE L

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.