Factsheet for Os01t0880800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
vacuole 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01858	Sorghum	mitochondrion, plastid	88.98	89.21
Zm00001d012221_P001	Maize	plastid	87.4	87.63
HORVU3Hr1G091320.2	Barley	plastid	84.51	85.19
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	84.25	84.92
TraesCS3D01G403800.1	Wheat	plastid	84.51	84.29
GSMUA_Achr8P32640_001	Banana	cytosol	60.1	83.88
GSMUA_Achr7P03060_001	Banana	plastid	62.2	75.24
KRH15948	Soybean	cytosol, nucleus	62.99	71.22
VIT_10s0003g04810.t01	Wine grape	cytosol	21.78	69.17
Solyc06g059700.2.1	Tomato	cytosol	25.72	69.01
VIT_18s0001g15460.t01	Wine grape	plastid	68.24	66.84
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	45.14	66.15
AT1G43800.1	Thale cress	plastid	66.93	65.22
PGSC0003DMT400013389	Potato	cytosol	43.31	63.71
Os04t0379900-01	Rice	plastid	64.3	62.82
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	21.0	62.5
Solyc01g009960.2.1	Tomato	plastid	49.34	62.46
Solyc06g054670.1.1	Tomato	plastid	60.63	60.95
KRH18113	Soybean	plastid	60.37	60.85
PGSC0003DMT400079085	Potato	plastid	60.89	59.95
Os01t0919900-01	Rice	plastid	62.73	59.75
PGSC0003DMT400079075	Potato	plastid	60.63	59.23
PGSC0003DMT400095159	Potato	plastid	59.58	59.11
Solyc06g059720.2.1	Tomato	plastid	59.06	58.14
Solyc06g059710.2.1	Tomato	plastid	58.53	57.62
Os02t0504800-01	Rice	plastid	46.72	55.28
KRH18114	Soybean	cytosol	53.54	54.4
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	34.91	49.81
Os08t0200100-01	Rice	plastid	52.23	49.26
PGSC0003DMT400079080	Potato	plastid	26.51	45.91
Os03t0423300-01	Rice	plastid	50.13	45.69
Os08t0199400-01	Rice	plastid	49.87	45.35
Os03t0741000-00	Rice	plastid	27.03	34.33
Os06t0503800-00	Rice	plastid	21.52	33.61

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:4324844	MapMan:5.1.7.1	EMBL:AK059526	EMBL:AK101524	EMBL:AK120809
ProteinID:BAC06230.1	ProteinID:BAF06908.1	ProteinID:BAS75557.1	ncoils:Coil	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	GO:GO:0102786	InterPro:IPR012348	EnsemblPlantsGene:Os01g0880800
EnsemblPlants:Os01t0880800-01	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	UniProt:Q8LJJ9
InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI00000496DE	RefSeq:XP_015630103.1	SEG:seg	:

Description

Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase). (Os01t0880800-01)

Coordinates

chr1:+:38224446..38225878

Molecular Weight (calculated)

42945.4 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.361

Length

381 amino acids

Sequence
(BLAST)

001: MQVVGTVRVS GCGAVVAPSR RQCRVSAAVL TAAETATATR RRVTHSMPPE KAEVFRSLEG WARSSLLPLL KPVEECWQPT DFLPDSSSEM FEHQVHELRA
101: RAAGLPDEYF VVLVGDMITE EALPTYQTMI NTLDGVRDET GASACPWAVW TRTWTAEENR HGDILGKYMY LSGRVDMRMV EKTVQYLIGS GMDPGTENNP
201: YLGFVYTSFQ ERATAVSHGN TARLARAHGD DVLARTCGTI AADEKRHETA YGRIVEQLLR LDPDGAMLAI ADMMHKRITM PAHLMHDGRD MNLFDHFAAV
301: AQRLNVYTAR DYADIVEFLV KRWKLETLET GLSGEGRRAR DFVCGLAKRM RRAAERAEDR AKKDEQRKVK FSWIYDREVI V

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.