Factsheet for PGSC0003DMT400095159

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059710.2.1	Tomato	plastid	83.59	82.95
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	27.6	82.81
PGSC0003DMT400079085	Potato	plastid	81.77	81.14
PGSC0003DMT400079075	Potato	plastid	80.99	79.74
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	52.86	78.08
PGSC0003DMT400013389	Potato	cytosol	49.74	73.75
GSMUA_Achr8P32640_001	Banana	cytosol	48.44	68.13
KRH15948	Soybean	cytosol, nucleus	58.59	66.77
VIT_10s0003g04810.t01	Wine grape	cytosol	19.79	63.33
PGSC0003DMT400079080	Potato	plastid	35.94	62.73
VIT_18s0001g15460.t01	Wine grape	plastid	63.02	62.21
EES01858	Sorghum	mitochondrion, plastid	61.2	61.84
KRH18113	Soybean	plastid	60.16	61.11
GSMUA_Achr7P03060_001	Banana	plastid	49.74	60.63
AT1G43800.1	Thale cress	plastid	61.72	60.61
Zm00001d012221_P001	Maize	plastid	59.9	60.53
Os01t0880800-01	Rice	plastid	59.11	59.58
TraesCS3D01G403800.1	Wheat	plastid	58.59	58.9
HORVU3Hr1G091320.2	Barley	plastid	57.81	58.73
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	57.55	58.47
PGSC0003DMT400041874	Potato	plastid	57.55	56.23
PGSC0003DMT400002555	Potato	plastid	56.51	55.22
PGSC0003DMT400042118	Potato	plastid	56.25	54.41
KRH18114	Soybean	cytosol	50.78	52.0
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	32.81	47.19
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	16.93	44.52

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:102593930	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
UniProt:M1DVP8	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400044730	PGSC:PGSC0003DMG400044730	EnsemblPlants:PGSC0003DMT400095159	PIRSF:PIRSF000346
PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI000296E73F	RefSeq:XP_006357932.1

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG400044730]

Coordinates

chr6:+:35870198..35872535

Molecular Weight (calculated)

44286.2 Da

IEP (calculated)

8.308

GRAVY (calculated)

-0.438

Length

384 amino acids

Sequence
(BLAST)

001: MQTTSLSQFN IPSPPPKTTI LHRKTTSSRR LSPIFAMAST TAPPSRHQVT HSMPPEKIEI FKSLESWVSE NILPLRKPVE KCWQPIEFLP DPSQGPDVFV
101: EEVRALRQRV LGLSDEYLVM LVGNMLTEDA LPTYQTFVNT FDGVRDETAS SPCPWAIWTR AWSAEENRHG DLLRTYLYLS GRVDMLMVEK TLQYSIGAGS
201: DVGAENNPYM GFVYTSFQER ATFLTHGNMA RLATKDGDPV LARICGTIAA DEKRHENAYT RIIEKLLEVD PNTTKQAIAS MMRKRITMPL HLMYDGQDPN
301: LFEHFSAIFQ KQDVYTSRHY AEILEFFIRR WELEKLEGLT EEARRAQDFV CQLPRKIRRL ENRTKKLESR QVKFSWIFNK SLSV

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.