CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15948	Soybean	cytosol, nucleus	75.13	84.27
GSMUA_Achr8P32640_001	Banana	cytosol	53.17	73.63
VIT_18s0001g15460.t01	Wine grape	plastid	75.13	73.01
Solyc06g059700.2.1	Tomato	cytosol	25.93	69.01
AT1G43800.1	Thale cress	plastid	69.84	67.52
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	46.3	67.31
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	22.75	67.19
KRH18114	Soybean	cytosol	66.4	66.93
GSMUA_Achr7P03060_001	Banana	plastid	52.65	63.17
EES01858	Sorghum	mitochondrion, plastid	62.96	62.63
HORVU3Hr1G091320.2	Barley	plastid	62.43	62.43
Zm00001d012221_P001	Maize	plastid	62.7	62.37
PGSC0003DMT400013389	Potato	cytosol	42.59	62.16
TraesCS3D01G403800.1	Wheat	plastid	62.17	61.52
Solyc01g009960.2.1	Tomato	plastid	48.94	61.46
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	61.38	61.38
Os01t0880800-01	Rice	plastid	60.85	60.37
Solyc06g059720.2.1	Tomato	plastid	61.64	60.21
PGSC0003DMT400095159	Potato	plastid	61.11	60.16
PGSC0003DMT400079085	Potato	plastid	61.38	59.95
KRH71270	Soybean	endoplasmic reticulum, nucleus	61.38	59.34
PGSC0003DMT400079075	Potato	plastid	61.11	59.23
Solyc06g054670.1.1	Tomato	plastid	59.26	59.1
Solyc06g059710.2.1	Tomato	plastid	59.26	57.88
KRH50195	Soybean	plastid	61.38	57.71
PGSC0003DMT400079080	Potato	plastid	28.31	48.64

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:100816146	MapMan:5.1.7.1	EMBL:ACUP02008031	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF
EnsemblPlantsGene:GLYMA_13G038600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	UniProt:K7LY05	EnsemblPlants:KRH18113	ProteinID:KRH18113	ProteinID:KRH18113.1
EMBL:KX881936	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI000233AF85	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:11956631..11959361

Molecular Weight (calculated)

43036.9 Da

IEP (calculated)

7.899

GRAVY (calculated)

-0.417

Length

378 amino acids

Sequence
(BLAST)

001: MQIQTLPLAS PAPRITRHHF PRPPKCAVTA TPPPLKERRN HSMPPEKIEI FKSLEGWASQ RVLPLLKPVE QCWQPQKFLP DSTLPFDEFI EAVRSLRHRT
101: KELSDEYFLV LVGDMVTEEA LPTYQTIMSG LDGVGDKCGS NPSPWAVWTR AWSAEENRHG DLLRTYLYLS GRVDMKMIER TIHNLIAAGM DPGFENNPYL
201: GFVYTSFQER ATFVSHGNTA RLAKEGGDPV LACICGTIAA DEKRHENAYS RIVEKLLEVD PTGAMLAIGT TMEKKITMPA HLMYDGEDPR LFEHYSTVAQ
301: RMGVYTAKDY ADILEFLIGR WRLEKLEGLT AEGKRAQDFV CGLAPRIRKL QERADERARK MKPHGVKFSW IFNKELHL

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.