CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50195	Soybean	plastid	98.21	95.52
VIT_05s0094g00750.t01	Wine grape	plastid	71.87	87.0
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.55	84.76
PGSC0003DMT400042118	Potato	plastid	85.68	84.38
Solyc06g053480.2.1	Tomato	plastid	85.42	84.13
Bra000321.1-P	Field mustard	plastid	83.89	82.41
CDX83464	Canola	plastid	83.89	82.41
CDY44250	Canola	plastid	83.63	81.95
AT2G43710.1	Thale cress	plastid	83.63	81.55
CDX79807	Canola	plastid	83.63	81.55
CDY17916	Canola	plastid	83.12	81.45
VIT_12s0034g00180.t01	Wine grape	cytosol	21.99	81.13
Bra004778.1-P	Field mustard	plastid	82.86	80.8
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.23	79.75
GSMUA_Achr7P22860_001	Banana	plastid	72.63	78.67
GSMUA_Achr8P08750_001	Banana	plastid	70.59	78.19
EES04113	Sorghum	plastid	79.03	77.83
Zm00001d012033_P002	Maize	mitochondrion	78.01	77.81
Os01t0919900-01	Rice	plastid	78.52	76.75
TraesCS3B01G463000.1	Wheat	plastid	76.21	75.83
TraesCS3D01G421700.1	Wheat	plastid	75.96	75.77
Os04t0379900-01	Rice	plastid	75.19	75.38
Zm00001d042344_P002	Maize	plastid	79.03	75.0
EES10606	Sorghum	plastid	75.19	75.0
Zm00001d025170_P001	Maize	plastid	74.68	74.49
TraesCS2A01G280700.2	Wheat	plastid	74.68	74.49
TraesCS2D01G279500.2	Wheat	golgi, plastid	74.42	74.23
TraesCS2B01G298000.1	Wheat	plastid	74.42	74.23
Zm00001d004019_P001	Maize	plastid	74.42	74.23
VIT_12s0034g00190.t01	Wine grape	extracellular	29.92	70.06
TraesCS5A01G123600.2	Wheat	plastid	68.29	69.35
KRH15948	Soybean	cytosol, nucleus	59.59	69.14
TraesCS5D01G131500.1	Wheat	plastid	67.52	69.11
HORVU5Hr1G039730.1	Barley	plastid	67.77	68.83
TraesCS5B01G123200.1	Wheat	plastid	67.52	68.57
GSMUA_Achr5P25160_001	Banana	plastid	67.77	67.26
TraesCS5D01G548700.1	Wheat	plastid	66.24	66.24
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	74.68	65.62
TraesCS5B01G539600.1	Wheat	plastid	65.47	65.47
KXG30261	Sorghum	plastid	68.54	64.42
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	65.73	64.41
HORVU3Hr1G094050.3	Barley	plastid	75.96	63.87
TraesCS4A01G326700.1	Wheat	plastid	66.24	63.33
Os02t0504800-01	Rice	plastid	50.64	61.49
KRH18113	Soybean	plastid	59.34	61.38
Zm00001d050552_P001	Maize	plastid	68.8	61.14
TraesCS3A01G426800.3	Wheat	plastid	74.68	60.58
KRH18114	Soybean	cytosol	52.69	54.93

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	EntrezGene:547808	EMBL:ACUP02000881	UniProt:B8XJY3	InterPro:FADS-2_CS
EMBL:FJ393221	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	EnsemblPlantsGene:GLYMA_02G138100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114
GO:GO:0102786	InterPro:IPR012348	EnsemblPlants:KRH71270	ProteinID:KRH71270	ProteinID:KRH71270.1	PFAM:PF03405
PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI0001895372	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:14302427..14306293

Molecular Weight (calculated)

44890.7 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.497

Length

391 amino acids

Sequence
(BLAST)

001: MALRLNPIPT QTFSLPQMAS LRSPRFRMAS TLRSGSKEVE NIKKPFTPPR EVHVQVTHSM PPQKIEIFKS LEDWAEQNIL THLKPVEKCW QPQDFLPDPS
101: SDGFEEQVKE LRERAKELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASLTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM KQIEKTIQYL
201: IGSGMDPRTE NSPYLGFIYT SFQERATFIS HGNTARLAKE HGDIKLAQIC GMIASDEKRH ETAYTKIVEK LFEVDPDGTV MAFADMMRKK IAMPAHLMYD
301: GRDDNLFDSY SSVAQRIGVY TAKDYADILE FLVGRWKVEQ LTGLSGEGRK AQEYICGLPP RIRRLEERAQ ARVKESSTLK FSWIHDREVL L

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.