CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32640_001	Banana	cytosol	61.72	76.19
KRH18113	Soybean	plastid	84.27	75.13
VIT_18s0001g15460.t01	Wine grape	plastid	83.38	72.24
Solyc06g059700.2.1	Tomato	cytosol	29.97	71.13
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	26.11	68.75
AT1G43800.1	Thale cress	plastid	78.93	68.03
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	52.23	67.69
KRH18114	Soybean	cytosol	74.48	66.93
PGSC0003DMT400013389	Potato	cytosol	50.45	65.64
HORVU3Hr1G091320.2	Barley	plastid	71.81	64.02
Zm00001d012221_P001	Maize	plastid	72.11	63.95
EES01858	Sorghum	mitochondrion, plastid	72.11	63.95
Solyc01g009960.2.1	Tomato	plastid	56.38	63.12
TraesCS3D01G403800.1	Wheat	plastid	71.51	63.09
Os01t0880800-01	Rice	plastid	71.22	62.99
GSMUA_Achr7P03060_001	Banana	plastid	58.75	62.86
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	70.33	62.7
KRH71270	Soybean	endoplasmic reticulum, nucleus	69.14	59.59
Solyc06g054670.1.1	Tomato	plastid	66.17	58.84
PGSC0003DMT400095159	Potato	plastid	66.77	58.59
PGSC0003DMT400079075	Potato	plastid	67.66	58.46
PGSC0003DMT400079085	Potato	plastid	67.06	58.4
KRH50195	Soybean	plastid	69.44	58.21
Solyc06g059720.2.1	Tomato	plastid	66.77	58.14
Solyc06g059710.2.1	Tomato	plastid	65.28	56.85
PGSC0003DMT400079080	Potato	plastid	29.67	45.45

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	EMBL:ACUP02008735	ProteinID:ART33334.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2
InterPro:Ferritin-like_SF	EnsemblPlantsGene:GLYMA_14G121400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	UniProt:I1MAE7	InterPro:IPR012348
EnsemblPlants:KRH15948	ProteinID:KRH15948	ProteinID:KRH15948.1	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574
PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI00023D3BEF	:

Description

hypothetical protein

Coordinates

chr14:-:17499717..17502413

Molecular Weight (calculated)

38630.2 Da

IEP (calculated)

5.839

GRAVY (calculated)

-0.478

Length

337 amino acids

Sequence
(BLAST)

001: MPPEKKEIFK SLEGWASEWV LPLLKPVEQC WQPQNFLPDP SLPHEEFSHQ VKELRERTKE LPDEYFVVLV GDMVTEDALP TYQTMINNLD GVKDDSGTSP
101: SPWAVWTRAW TAEENRHGDL LRTYLYLSGR VDMAKVEKTV HYLISAGMDP GTDNNPYLGF VYTSFQERAT FVAHGNTARL AKEGGDPVLA RLCGTIAADE
201: KRHENAYSRI VEKLLEVDPT GAMVAIGNMM EKKITMPAHL MYDGDDPRLF EHYSAVAQRI GVYTANDYAD ILEFLVERWR LEKLEGLMAE GKRAQDFVCG
301: LAPRIRRLQE RADERARKMK KHHGVKFSWI FNKELLL

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.