Factsheet for Solyc06g059720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	28.68	86.72
Solyc06g059700.2.1	Tomato	cytosol	31.52	85.92
Solyc06g059710.2.1	Tomato	plastid	84.24	84.24
Solyc06g054670.1.1	Tomato	plastid	80.62	82.32
Solyc06g034170.1.1	Tomato	peroxisome, plastid	21.19	75.93
Solyc01g009960.2.1	Tomato	plastid	57.36	73.75
GSMUA_Achr8P32640_001	Banana	cytosol	47.29	67.03
KRH15948	Soybean	cytosol, nucleus	58.14	66.77
VIT_18s0001g15460.t01	Wine grape	plastid	62.79	62.47
KRH18113	Soybean	plastid	60.21	61.64
EES01858	Sorghum	mitochondrion, plastid	60.21	61.32
GSMUA_Achr7P03060_001	Banana	plastid	49.1	60.32
VIT_10s0003g04810.t01	Wine grape	cytosol	18.6	60.0
Zm00001d012221_P001	Maize	plastid	58.66	59.74
Os01t0880800-01	Rice	plastid	58.14	59.06
TraesCS3D01G403800.1	Wheat	plastid	57.88	58.64
AT1G43800.1	Thale cress	plastid	59.17	58.57
HORVU3Hr1G091320.2	Barley	plastid	56.85	58.2
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	56.85	58.2
Solyc11g008680.1.1	Tomato	plastid	56.85	55.98
Solyc03g063110.2.1	Tomato	plastid	55.81	54.96
Solyc06g053480.2.1	Tomato	plastid	53.75	52.39
KRH18114	Soybean	cytosol	50.13	51.73
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	32.3	46.82

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	UniProt:K4C6F9
PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240
EnsemblPlantsGene:Solyc06g059720.2	EnsemblPlants:Solyc06g059720.2.1	UniParc:UPI0002765D7A	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:37581978..37583370

Molecular Weight (calculated)

44428.5 Da

IEP (calculated)

7.539

GRAVY (calculated)

-0.333

Length

387 amino acids

Sequence
(BLAST)

001: MIQTISFSLF NIPSIVRGSP PPTTTILRRK TTSSRRLSPV IAVASPTSRH QVTHSMPPEK LEIFKSLEPW VSENVLSLRK PVEKCWQPIE FLPDPSQGPE
101: QFEEEVRALR QRVLGLSDEY FIMLAGNMLT EDALPTYQTL FNTFDGVRDE TGSSPCPWAI WTRAWSAEEN RHGDLLRTYL YLSGRVDVLM VEKTLQYSIG
201: AGIDIGAENN PYMGFVYTSF QERATFLTHG NMARLAREGG DPVLARICGT IAADEKRHEN AYTRIIDKLL EVDPNTTMLA IANMMKKRIT MPLHLMYDGQ
301: DPNIFEYFST ISQNQGVYTS RDYAEILEFF IIRWELEKLQ GLTTEARRAQ DFVCGLPRKI RKLEDRTKKL ESRLIKFSWI FNKQVNV

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.