Factsheet for GSMUA_Achr7P03060_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32640_001	Banana	cytosol	78.41	90.48
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	34.6	66.46
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	33.33	66.46
EES01858	Sorghum	mitochondrion, plastid	76.51	63.42
Zm00001d012221_P001	Maize	plastid	75.56	62.63
Os01t0880800-01	Rice	plastid	75.24	62.2
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	74.29	61.9
HORVU3Hr1G091320.2	Barley	plastid	73.97	61.64
TraesCS3D01G403800.1	Wheat	plastid	73.97	60.99
Solyc06g059700.2.1	Tomato	cytosol	26.98	59.86
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	55.24	59.59
VIT_10s0003g04810.t01	Wine grape	cytosol	22.54	59.17
KRH15948	Soybean	cytosol, nucleus	62.86	58.75
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	47.62	57.69
VIT_18s0001g15460.t01	Wine grape	plastid	71.11	57.58
AT1G43800.1	Thale cress	plastid	68.25	54.99
GSMUA_Achr8P08750_001	Banana	plastid	60.95	54.39
PGSC0003DMT400013389	Potato	cytosol	44.44	54.05
Solyc01g009960.2.1	Tomato	plastid	51.43	53.82
GSMUA_Achr7P22860_001	Banana	plastid	61.59	53.74
KRH18113	Soybean	plastid	63.17	52.65
GSMUA_Achr5P25190_001	Banana	mitochondrion	10.79	51.52
Solyc06g054670.1.1	Tomato	plastid	61.9	51.45
PGSC0003DMT400079085	Potato	plastid	62.54	50.9
PGSC0003DMT400079075	Potato	plastid	62.54	50.51
PGSC0003DMT400095159	Potato	plastid	60.63	49.74
Solyc06g059720.2.1	Tomato	plastid	60.32	49.1
GSMUA_Achr5P25160_001	Banana	plastid	60.95	48.73
Solyc06g059710.2.1	Tomato	plastid	59.37	48.32
KRH18114	Soybean	cytosol	53.97	45.33
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	38.41	45.32
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	18.41	45.31
PGSC0003DMT400079080	Potato	plastid	28.25	40.45
GSMUA_Achr5P25180_001	Banana	cytosol	18.41	35.15

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr7G03060_001	EnsemblPlants:GSMUA_Achr7P03060_001
EnsemblPlants:GSMUA_Achr7T03060_001	InterPro:IPR012348	UniProt:M0TE96	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI0002948CE1	SEG:seg	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G03060_001]

Coordinates

chr7:+:2437121..2438357

Molecular Weight (calculated)

35405.0 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.301

Length

315 amino acids

Sequence
(BLAST)

001: MQAHSLALSP RHRLLSSPLI SPKAGGSRRH RVSAIAVPPL RRNAVQHSMP PEKVEVFRSL EGWATRALLP LLKPVRALRA RTAELPDDYF VVLVGDMITE
101: EALPTYQTMI NTLDGVRDET GASECPWAVW TRKWTAEENR HGDILGKYLY LSGRVDMRML EKTVQYLIGA GMDPGTENNP YLGFVYTSFQ ERATFISHGN
201: TARLAKDRGD AVLARVCGTI AADEKRHENA YARIVEKLLE LDPDGAMLAI ADMMRKKITM PAHLMLEAGL SGEGRRARDF VCGLPARMRR VQERAKVAEP
301: KRVKFSWIFD REVTI

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.