Factsheet for PGSC0003DMT400013389

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009960.2.1	Tomato	plastid	76.83	66.11
VIT_10s0003g04810.t01	Wine grape	cytosol	27.03	58.33
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	27.41	55.47
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	52.51	52.31
GSMUA_Achr8P32640_001	Banana	cytosol	54.05	51.28
PGSC0003DMT400079085	Potato	plastid	75.68	50.65
KRH15948	Soybean	cytosol, nucleus	65.64	50.45
PGSC0003DMT400079075	Potato	plastid	74.9	49.74
PGSC0003DMT400095159	Potato	plastid	73.75	49.74
PGSC0003DMT400079080	Potato	plastid	41.31	48.64
VIT_18s0001g15460.t01	Wine grape	plastid	68.34	45.5
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	25.1	44.52
GSMUA_Achr7P03060_001	Banana	plastid	54.05	44.44
EES01858	Sorghum	mitochondrion, plastid	64.48	43.95
AT1G43800.1	Thale cress	plastid	65.64	43.48
Os01t0880800-01	Rice	plastid	63.71	43.31
Zm00001d012221_P001	Maize	plastid	63.32	43.16
PGSC0003DMT400041874	Potato	plastid	65.25	43.0
KRH18113	Soybean	plastid	62.16	42.59
HORVU3Hr1G091320.2	Barley	plastid	61.78	42.33
PGSC0003DMT400042118	Potato	plastid	64.86	42.32
PGSC0003DMT400002555	Potato	plastid	64.09	42.24
TraesCS3D01G403800.1	Wheat	plastid	62.16	42.15
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	61.0	41.8
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	41.7	40.45
KRH18114	Soybean	cytosol	54.44	37.6

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	UniProt:M1A2S5	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400005223	PGSC:PGSC0003DMG400005223
EnsemblPlants:PGSC0003DMT400013389	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI000295D01B	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG400005223]

Coordinates

chr1:-:8975615..8976523

Molecular Weight (calculated)

29842.0 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.210

Length

259 amino acids

Sequence
(BLAST)

001: MPPKTMEVFK SLESWVFENI LPFLKPVEKC WQPNEFLPNP SQVSNGEFME EVRALRQRVL GLPDEYFVIL VGNMITEDAL PTYQTMFNRW DGVRDETGSS
101: PCPWAIWTRA WTAEENRHGD LLRTYIYLSG RVDMMMIEKT LQYTIRAGMS EQHFCAHGNI ARLVKEAGDP VLARICGTIA ADEKRHENAY IKIVEKLLEV
201: DPNTTMLAIA HMIKNRIVMP MHLMSDGQDS NMYDNFSAIS ERLGVYTACD YAEILEFFL

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.