Factsheet for PGSC0003DMT400041874

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008680.1.1	Tomato	plastid	98.22	98.22
PGSC0003DMT400002555	Potato	plastid	84.73	84.73
VIT_00s0499g00030.t01	Wine grape	plastid	82.19	82.19
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	33.33	79.88
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	31.3	77.85
PGSC0003DMT400042118	Potato	plastid	76.84	76.07
EES10606	Sorghum	plastid	74.81	75.0
Zm00001d004019_P001	Maize	plastid	74.55	74.74
Os04t0379900-01	Rice	plastid	74.05	74.62
Zm00001d025170_P001	Maize	plastid	74.05	74.23
TraesCS3B01G463000.1	Wheat	plastid	74.05	74.05
TraesCS3D01G421700.1	Wheat	plastid	73.79	73.98
GSMUA_Achr7P22860_001	Banana	plastid	67.94	73.96
Zm00001d012033_P002	Maize	mitochondrion	73.28	73.47
TraesCS2A01G280700.2	Wheat	plastid	73.28	73.47
Os01t0919900-01	Rice	plastid	74.55	73.25
TraesCS2D01G279500.2	Wheat	golgi, plastid	73.03	73.21
TraesCS2B01G298000.1	Wheat	plastid	73.03	73.21
GSMUA_Achr8P08750_001	Banana	plastid	65.39	72.8
EES04113	Sorghum	plastid	73.54	72.8
Zm00001d042344_P002	Maize	plastid	74.55	71.12
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	45.04	68.08
HORVU5Hr1G039730.1	Barley	plastid	66.67	68.05
TraesCS5A01G123600.2	Wheat	plastid	66.67	68.05
TraesCS5D01G131500.1	Wheat	plastid	65.9	67.8
TraesCS5B01G123200.1	Wheat	plastid	66.41	67.79
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	24.94	67.12
TraesCS5D01G548700.1	Wheat	plastid	65.39	65.73
PGSC0003DMT400013389	Potato	cytosol	43.0	65.25
TraesCS5B01G539600.1	Wheat	plastid	64.89	65.22
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	73.54	64.94
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	65.39	64.41
GSMUA_Achr5P25160_001	Banana	plastid	63.61	63.45
TraesCS4A01G326700.1	Wheat	plastid	65.65	63.08
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	20.36	62.5
KXG30261	Sorghum	plastid	66.16	62.5
HORVU3Hr1G094050.3	Barley	plastid	73.79	62.37
Os02t0504800-01	Rice	plastid	49.11	59.94
PGSC0003DMT400079085	Potato	plastid	58.02	58.91
Zm00001d050552_P001	Maize	plastid	65.9	58.86
TraesCS3A01G426800.3	Wheat	plastid	72.01	58.71
PGSC0003DMT400079075	Potato	plastid	58.02	58.46
PGSC0003DMT400095159	Potato	plastid	56.23	57.55
PGSC0003DMT400079080	Potato	plastid	26.72	47.73

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:102577562	MapMan:5.1.7.1	ProteinID:AAA33839	ProteinID:AAA33839.1	InterPro:FADS-2_CS
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	GO:GO:0102786	InterPro:IPR012348
UniProt:M1BC63	EMBL:M91238	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400016247	PGSC:PGSC0003DMG400016247	EnsemblPlants:PGSC0003DMT400041874
PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI0002951E1B	RefSeq:XP_006353260.1	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400016247]

Coordinates

chr11:-:3215749..3220139

Molecular Weight (calculated)

44638.5 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.395

Length

393 amino acids

Sequence
(BLAST)

001: MALNVNGVSL KSHKMLPFPC SSARSQRVFM ASTIHRPSVE VGSVKKAFTP PREVHVQVTH SMPPEKIEVF DSLRDWAAQN LLVHLKPVEK CWQPTDFLPD
101: PASEGFDEQV KELRERCKEI PDDYFVVLIG DMITEEALPT YQTMINTLDG VRDETGASLT PWAIWTRAWT AEENRHGDLL NKYLYLSGRV DMKQIEKTIQ
201: YLIGSGMDPR TENNPYLGFV YTSFQERATF VSHGNTARLA KEHGDMKLAQ ICGSIAADEK RHETAYTKIV EKLLEVDPDG AILAIGDMMR KNISMPAHLM
301: YDGRDDNLFE HFSAVAQRLG VYTAKDYADI LEFLVGRWEV EKLTGLSSEG RRAQDYVCGL APRIRKLEER AQARAKQRSP VPFSWIFGKE IKI

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.