Factsheet for TraesCS2D01G279500.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G298000.1	Wheat	plastid	98.98	98.98
TraesCS2A01G280700.2	Wheat	plastid	98.72	98.72
Os04t0379900-01	Rice	plastid	89.29	89.74
EES10606	Sorghum	plastid	87.5	87.5
Zm00001d025170_P001	Maize	plastid	86.48	86.48
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	97.96	86.29
Zm00001d004019_P001	Maize	plastid	85.97	85.97
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.71	85.37
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.65	81.01
TraesCS3D01G421700.1	Wheat	plastid	77.04	77.04
Solyc06g053480.2.1	Tomato	plastid	77.3	76.32
PGSC0003DMT400042118	Potato	plastid	77.04	76.07
PGSC0003DMT400002555	Potato	plastid	75.51	75.32
VIT_00s0499g00030.t01	Wine grape	plastid	75.26	75.06
CDY17916	Canola	plastid	76.28	74.94
Solyc03g063110.2.1	Tomato	plastid	74.74	74.55
GSMUA_Achr7P22860_001	Banana	plastid	68.62	74.52
KRH71270	Soybean	endoplasmic reticulum, nucleus	74.23	74.42
Bra000321.1-P	Field mustard	plastid	75.51	74.37
TraesCS5D01G131500.1	Wheat	plastid	72.45	74.35
AT2G43710.1	Thale cress	plastid	76.02	74.31
CDY44250	Canola	plastid	75.51	74.19
CDX83464	Canola	plastid	75.26	74.12
Bra004778.1-P	Field mustard	plastid	75.26	73.57
CDX79807	Canola	plastid	75.26	73.57
VIT_05s0094g00750.t01	Wine grape	plastid	60.46	73.37
PGSC0003DMT400041874	Potato	plastid	73.21	73.03
Solyc11g008680.1.1	Tomato	plastid	72.96	72.77
VIT_12s0034g00180.t01	Wine grape	cytosol	19.64	72.64
GSMUA_Achr8P08750_001	Banana	plastid	65.31	72.52
KRH50195	Soybean	plastid	74.23	72.39
TraesCS5D01G548700.1	Wheat	plastid	71.94	72.12
TraesCS3D01G403800.1	Wheat	plastid	62.76	64.4
GSMUA_Achr5P25160_001	Banana	plastid	64.29	63.96
VIT_12s0034g00190.t01	Wine grape	extracellular	24.49	57.48
TraesCS2D01G074000.1	Wheat	plastid	53.32	51.6
TraesCS3D01G413500.1	Wheat	plastid	50.26	47.13
TraesCS5D01G244700.1	Wheat	plastid	48.72	46.93
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	51.28	44.77
TraesCS2D01G074100.1	Wheat	mitochondrion	50.77	43.64

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348
PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like
SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS2D01G279500	EnsemblPlants:TraesCS2D01G279500.2	TIGR:cd01050	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:351057132..351060317

Molecular Weight (calculated)

44630.0 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.481

Length

392 amino acids

Sequence
(BLAST)

001: MAFRACLSSH KASPSPSVAQ RRASNGAPPV VAMASTMNEV KIAKKPYAPP REVHLQVMHS LPAQKQEIFD SLQSWARDNL LNLLKPVEKS WQPQDFLPEP
101: SSEGFYDEVK ELRERAKEIP DDYFVCLVGD MVTEEALPTY QTMLNTLDGV RDETGASPTA WAVWTRAWTA EENRHGDLLN KYMYLSGRVD MRQIEKTIQY
201: LIGSGMDPGT ENNPYMGFLY TSFQERATFI SHGNTARHAK QFGDLKLAQI CGTIAADEKR HETAYTKIVE KLFEIDPDYT VLAFADMMRK KISMPAHLMY
301: DGEDDNLFEH FSSVAQRLGV YTAKDYADIL EFLVQRWKVA DLTGLSGEGR RSQDYVCTLA TRFRRLDERA QARAKQGPVV PFSWVYDRKV QL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.