Factsheet for PGSC0003DMT400002555

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g063110.2.1	Tomato	plastid	96.95	96.95
PGSC0003DMT400041874	Potato	plastid	84.73	84.73
VIT_00s0499g00030.t01	Wine grape	plastid	84.22	84.22
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.11	84.15
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	31.81	79.11
PGSC0003DMT400042118	Potato	plastid	79.13	78.34
TraesCS3B01G463000.1	Wheat	plastid	76.59	76.59
TraesCS3D01G421700.1	Wheat	plastid	76.34	76.53
Zm00001d012033_P002	Maize	mitochondrion	75.83	76.02
Os01t0919900-01	Rice	plastid	77.35	76.0
Os04t0379900-01	Rice	plastid	75.32	75.9
TraesCS2A01G280700.2	Wheat	plastid	75.57	75.77
GSMUA_Achr7P22860_001	Banana	plastid	69.47	75.62
EES04113	Sorghum	plastid	76.34	75.57
TraesCS2B01G298000.1	Wheat	plastid	75.32	75.51
TraesCS2D01G279500.2	Wheat	golgi, plastid	75.32	75.51
Zm00001d025170_P001	Maize	plastid	74.55	74.74
GSMUA_Achr8P08750_001	Banana	plastid	66.92	74.5
EES10606	Sorghum	plastid	74.3	74.49
Zm00001d004019_P001	Maize	plastid	73.79	73.98
Zm00001d042344_P002	Maize	plastid	77.35	73.79
HORVU5Hr1G039730.1	Barley	plastid	69.47	70.91
TraesCS5A01G123600.2	Wheat	plastid	68.96	70.39
TraesCS5D01G131500.1	Wheat	plastid	68.19	70.16
TraesCS5B01G123200.1	Wheat	plastid	68.7	70.13
TraesCS5D01G548700.1	Wheat	plastid	68.45	68.8
TraesCS5B01G539600.1	Wheat	plastid	67.43	67.77
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	75.57	66.74
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	67.68	66.67
TraesCS4A01G326700.1	Wheat	plastid	68.96	66.26
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	43.77	66.15
KXG30261	Sorghum	plastid	69.72	65.87
HORVU3Hr1G094050.3	Barley	plastid	76.59	64.73
GSMUA_Achr5P25160_001	Banana	plastid	64.89	64.72
PGSC0003DMT400013389	Potato	cytosol	42.24	64.09
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	23.66	63.7
Zm00001d050552_P001	Maize	plastid	69.21	61.82
Os02t0504800-01	Rice	plastid	50.38	61.49
TraesCS3A01G426800.3	Wheat	plastid	75.32	61.41
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	19.85	60.94
PGSC0003DMT400079085	Potato	plastid	57.51	58.4
PGSC0003DMT400079075	Potato	plastid	57.51	57.95
PGSC0003DMT400095159	Potato	plastid	55.22	56.51
PGSC0003DMT400079080	Potato	plastid	26.46	47.27

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872
GO:GO:0055114	InterPro:IPR012348	UniProt:M0ZKA3	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400000978	PGSC:PGSC0003DMG400000978
EnsemblPlants:PGSC0003DMT400002555	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI000296A636	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400000978]

Coordinates

chr3:-:15753246..15758049

Molecular Weight (calculated)

44746.5 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.480

Length

393 amino acids

Sequence
(BLAST)

001: MALNFNSPTF QSNKTTRRPC SPLRSPRVFM ASTLRPPSVE GGNVKKPFSP PREVHVQVAH SMPPEKREIF DSLHGWAENN ILVHLKPVEK CWQASDFLPD
101: PASEGFEDQV KELRERCKEI PDDYFVVLVG DMITEEALPT YQTMLNTLDG VRDETGASLT PWAIWTRAWT AEENRHGDLL NKYLYLSGRV DMRQIEKTIQ
201: YLIGSGMDPR TENNPYLGFI YTSFQERATF ISHGNTARHA KEHGDMKLAQ VCGIIAADEK RHEIAYTKIV EKLFEVDPDG TVLAVADMMR KKISMPAHLM
301: YDGRDDNLFE HFSAVAQRLG VYTAKDYADI LEFLVGRWEI EKLTGLSGEG HKAQDYVCGL APRIRKLEER AQARAKQKTP VPFSWVFGKD IKL

Best Arabidopsis Sequence Match ( AT2G43710.2 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKSVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.