Factsheet for PGSC0003DMT400079080

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059700.2.1	Tomato	cytosol	45.0	69.72
VIT_10s0003g04810.t01	Wine grape	cytosol	32.27	59.17
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	29.55	44.52
PGSC0003DMT400013389	Potato	cytosol	48.64	41.31
PGSC0003DMT400079085	Potato	plastid	65.0	36.95
PGSC0003DMT400079075	Potato	plastid	65.45	36.92
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	44.09	36.33
PGSC0003DMT400095159	Potato	plastid	62.73	35.94
GSMUA_Achr8P32640_001	Banana	cytosol	37.27	30.04
KRH15948	Soybean	cytosol, nucleus	45.45	29.67
VIT_18s0001g15460.t01	Wine grape	plastid	50.45	28.53
KRH18113	Soybean	plastid	48.64	28.31
GSMUA_Achr7P03060_001	Banana	plastid	40.45	28.25
EES01858	Sorghum	mitochondrion, plastid	48.18	27.89
Zm00001d012221_P001	Maize	plastid	47.73	27.63
PGSC0003DMT400042118	Potato	plastid	49.55	27.46
HORVU3Hr1G091320.2	Barley	plastid	46.82	27.25
TraesCS3D01G403800.1	Wheat	plastid	47.27	27.23
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	45.91	26.72
PGSC0003DMT400041874	Potato	plastid	47.73	26.72
AT1G43800.1	Thale cress	plastid	47.27	26.6
Os01t0880800-01	Rice	plastid	45.91	26.51
PGSC0003DMT400002555	Potato	plastid	47.27	26.46
KRH18114	Soybean	cytosol	41.82	24.53
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	27.27	23.08
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	1.82	3.12

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	UniProt:M1D169	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG402030775
PGSC:PGSC0003DMG402030775	EnsemblPlants:PGSC0003DMT400079080	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI000296E588	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG402030775]

Coordinates

chr6:+:41113394..41114847

Molecular Weight (calculated)

25420.3 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.368

Length

220 amino acids

Sequence
(BLAST)

001: MMQTISFSQF NIPSIVPASL PPTTTIHRRK TTSSRRLSPV LAVASPTSRH LQVTHSMPPE KLEIFKSLEP WVSENVLPLR KPVEKCWQPI EFLPDPSQGP
101: DQFEEEVWAL RQRVLGLSDE YFVMLVGNML TEDALPTYQT LFNTFDGVCD ETGSSPCPWA IWTRAWSAEE NRHGDLLRTY LYLSGRRHYN TLLELELTSE
201: QRTIHIWALC THHFKSEPHF

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.