Factsheet for PGSC0003DMT400079076

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	78.12	38.46
Solyc06g059720.2.1	Tomato	plastid	86.72	28.68
PGSC0003DMT400095159	Potato	plastid	82.81	27.6
PGSC0003DMT400013389	Potato	cytosol	55.47	27.41
PGSC0003DMT400079075	Potato	plastid	79.69	26.15
KRH15948	Soybean	cytosol, nucleus	68.75	26.11
PGSC0003DMT400079085	Potato	plastid	78.91	26.1
VIT_18s0001g15460.t01	Wine grape	plastid	70.31	23.14
KRH18113	Soybean	plastid	67.19	22.75
GSMUA_Achr8P32640_001	Banana	cytosol	48.44	22.71
EES01858	Sorghum	mitochondrion, plastid	64.84	21.84
AT1G43800.1	Thale cress	plastid	66.41	21.74
Os01t0880800-01	Rice	plastid	62.5	21.0
HORVU3Hr1G091320.2	Barley	plastid	61.72	20.9
Zm00001d012221_P001	Maize	plastid	61.72	20.79
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	60.94	20.63
TraesCS3D01G403800.1	Wheat	plastid	60.94	20.42
PGSC0003DMT400041874	Potato	plastid	62.5	20.36
PGSC0003DMT400002555	Potato	plastid	60.94	19.85
PGSC0003DMT400042118	Potato	plastid	57.81	18.64
GSMUA_Achr7P03060_001	Banana	plastid	45.31	18.41
KRH18114	Soybean	cytosol	51.56	17.6
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	10.94	5.24
VIT_10s0003g04810.t01	Wine grape	cytosol	3.12	3.33
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	2.34	2.05
PGSC0003DMT400079080	Potato	plastid	3.12	1.82

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	UniProt:M1D167	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400030774
PGSC:PGSC0003DMG400030774	EnsemblPlants:PGSC0003DMT400079076	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI000296D22C	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG400030774]

Coordinates

chr6:+:41145650..41146036

Molecular Weight (calculated)

14728.8 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.306

Length

128 amino acids

Sequence
(BLAST)

001: MARLAIEGGD PVLARMCGTI VADEKRHENV YTRIIEKLLE VDPNTTMIAI ANMMKKRITM PLHLMYDGQD PNIFEHFSAI SQKQGVYTSR DYGEILEFFI
101: TRWELEKLEG FTGETRRAQD FVCGLPQD

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.