Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 3
- peroxisome 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0012g02500.t01 | Wine grape | cytosol | 22.47 | 88.24 |
| VIT_10s0003g04810.t01 | Wine grape | cytosol | 38.58 | 85.83 |
| Solyc06g059700.2.1 | Tomato | cytosol | 32.96 | 61.97 |
| GSMUA_Achr8P32640_001 | Banana | cytosol | 45.32 | 44.32 |
| PGSC0003DMT400079080 | Potato | plastid | 36.33 | 44.09 |
| VIT_18s0001g15460.t01 | Wine grape | plastid | 62.55 | 42.93 |
| VIT_12s0034g00180.t01 | Wine grape | cytosol | 16.85 | 42.45 |
| PGSC0003DMT400013389 | Potato | cytosol | 40.45 | 41.7 |
| VIT_05s0094g00630.t01 | Wine grape | plastid | 26.22 | 41.67 |
| VIT_05s0094g00750.t01 | Wine grape | plastid | 47.94 | 39.63 |
| GSMUA_Achr7P03060_001 | Banana | plastid | 45.32 | 38.41 |
| Solyc01g009960.2.1 | Tomato | plastid | 42.7 | 37.87 |
| AT1G43800.1 | Thale cress | plastid | 52.06 | 35.55 |
| Solyc06g054670.1.1 | Tomato | plastid | 50.19 | 35.36 |
| EES01858 | Sorghum | mitochondrion, plastid | 49.81 | 35.0 |
| Os01t0880800-01 | Rice | plastid | 49.81 | 34.91 |
| VIT_00s0499g00030.t01 | Wine grape | plastid | 51.31 | 34.86 |
| VIT_05s0094g00580.t01 | Wine grape | plastid | 46.82 | 34.53 |
| Zm00001d012221_P001 | Maize | plastid | 49.06 | 34.47 |
| VIT_05s0094g00730.t01 | Wine grape | plastid | 46.44 | 34.25 |
| PGSC0003DMT400079075 | Potato | plastid | 49.81 | 34.1 |
| TraesCS3A01G408700.1 | Wheat | mitochondrion, plastid | 47.94 | 33.86 |
| HORVU3Hr1G091320.2 | Barley | plastid | 47.94 | 33.86 |
| TraesCS3D01G403800.1 | Wheat | plastid | 47.94 | 33.51 |
| PGSC0003DMT400079085 | Potato | plastid | 48.31 | 33.33 |
| Solyc06g059710.2.1 | Tomato | plastid | 47.94 | 33.07 |
| VIT_12s0034g00190.t01 | Wine grape | extracellular | 20.6 | 32.93 |
| PGSC0003DMT400095159 | Potato | plastid | 47.19 | 32.81 |
| Solyc06g059720.2.1 | Tomato | plastid | 46.82 | 32.3 |
| PGSC0003DMT400079078 | Potato | cytoskeleton, peroxisome, plastid | 28.09 | 28.85 |
| VIT_05s0094g00740.t01 | Wine grape | plastid | 37.45 | 28.01 |
| VIT_05s0094g00550.t01 | Wine grape | cytosol | 27.34 | 27.97 |
| VIT_05s0094g00650.t01 | Wine grape | plastid | 40.07 | 26.55 |
| PGSC0003DMT400079076 | Potato | cytosol, peroxisome, plastid | 5.24 | 10.94 |
| VIT_00s0327g00070.t01 | Wine grape | cytosol, peroxisome, plastid | 1.5 | 6.56 |
Protein Annotations
| Gene3D:1.10.620.20 | EntrezGene:100248045 | wikigene:100248045 | MapMan:5.1.7.1 | ProteinID:CCB60141 | ProteinID:CCB60141.1 |
| UniProt:F6HZM6 | EMBL:FN596502 | InterPro:Fatty_acid_desaturase-2 | InterPro:Ferritin-like_SF | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006629 | GO:GO:0006631 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 |
| GO:GO:0045300 | GO:GO:0055114 | InterPro:IPR012348 | EntrezGene:LOC100248045 | wikigene:LOC100248045 | PFAM:PF03405 |
| PANTHER:PTHR31155 | PANTHER:PTHR31155:SF3 | InterPro:RNR-like | SUPFAM:SSF47240 | UniParc:UPI000210946A | ArrayExpress:VIT_07s0005g03820 |
| EnsemblPlantsGene:VIT_07s0005g03820 | EnsemblPlants:VIT_07s0005g03820.t01 | RefSeq:XP_002271964 | RefSeq:XP_002271964.2 | : | : |
Description
No Description!
Coordinates
chr7:-:6816174..6818840
Molecular Weight (calculated)
30603.4 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.360
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MFENTLNGFS AVAAPTCQQV THSMPPEKVE VFKSLEGWAS EWVLPLLKPV EQLWQPQDFL PDPTQPFDAF SEQVRELRDR TAELPDEYFV VLVGDMITEG
101: ALPTYQTMIN TLDGVRDERG ASASPWAKWT WSWTVEENCH GDLLRTYLYL SGWVDMCMIE RTVQYLISAG MVSDLEFFSL KDLKRIGVNE KDFLRKFFDL
201: GFVKFKSNGT KAKRPLGQIQ KTQGETKKSN FFGFPWGFCM DFLGNQTMMN FPENRMGDGF SWESNGG
101: ALPTYQTMIN TLDGVRDERG ASASPWAKWT WSWTVEENCH GDLLRTYLYL SGWVDMCMIE RTVQYLISAG MVSDLEFFSL KDLKRIGVNE KDFLRKFFDL
201: GFVKFKSNGT KAKRPLGQIQ KTQGETKKSN FFGFPWGFCM DFLGNQTMMN FPENRMGDGF SWESNGG
001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V
Arabidopsis Description
S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.