Factsheet for PGSC0003DMT400079075

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	65.38	98.08
PGSC0003DMT400079085	Potato	plastid	92.56	93.28
Solyc06g054670.1.1	Tomato	plastid	86.92	89.45
PGSC0003DMT400095159	Potato	plastid	79.74	80.99
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	26.15	79.69
PGSC0003DMT400013389	Potato	cytosol	49.74	74.9
GSMUA_Achr8P32640_001	Banana	cytosol	47.95	68.5
KRH15948	Soybean	cytosol, nucleus	58.46	67.66
PGSC0003DMT400079080	Potato	plastid	36.92	65.45
VIT_18s0001g15460.t01	Wine grape	plastid	64.1	64.27
VIT_10s0003g04810.t01	Wine grape	cytosol	19.49	63.33
EES01858	Sorghum	mitochondrion, plastid	61.54	63.16
GSMUA_Achr7P03060_001	Banana	plastid	50.51	62.54
Zm00001d012221_P001	Maize	plastid	60.77	62.37
KRH18113	Soybean	plastid	59.23	61.11
TraesCS3D01G403800.1	Wheat	plastid	59.49	60.73
Os01t0880800-01	Rice	plastid	59.23	60.63
HORVU3Hr1G091320.2	Barley	plastid	58.72	60.58
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	58.46	60.32
AT1G43800.1	Thale cress	plastid	60.26	60.1
PGSC0003DMT400041874	Potato	plastid	58.46	58.02
PGSC0003DMT400002555	Potato	plastid	57.95	57.51
PGSC0003DMT400042118	Potato	plastid	56.92	55.92
KRH18114	Soybean	cytosol	50.77	52.8
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	34.1	49.81
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	17.95	47.95

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:102594141	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348
UniProt:M1D166	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400030773	PGSC:PGSC0003DMG400030773	EnsemblPlants:PGSC0003DMT400079075	PIRSF:PIRSF000346
PANTHER:PTHR31155	PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI000295A89B	RefSeq:XP_006356735.1
SEG:seg	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG400030773]

Coordinates

chr6:+:41150414..41152623

Molecular Weight (calculated)

44664.0 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.329

Length

390 amino acids

Sequence
(BLAST)

001: MMQTTSFSQF NIPSIVRESP PPATTIHRRK TTLSRRLSLV LAVASPATSP SRHQVTHSMP PEKLEIFKSL EPWVSENVLP LRKPVEKCWQ PIEFLPDPSQ
101: GPEQFEEEVR ALRQRVLGLS DEYFVMLVGN MLTEDALPTY QTVINTWDGV RDETGSSPCP WAIWTRAWTA EENRHGDLLR TYLYLSGRVD MLMVEKTLQY
201: LIGAGIDIGL ENNPYLGYVY ASFQERATCS SHGNMARLAI KGGDPMLARI CGTIAADEKR HEHVYTRIVE KLLEVDPNAT MLAIAHMMKK KIIMPMHLIY
301: DGQDPNIFEH FSAIGERQGI YTSRHYAEIL EFFITRWKLE KLEGLIGEAR RAQDYVCGLP PRVRKLESRA KKIETRQVKF SWIFNKQVSA

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.