Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P32640_001 | Banana | cytosol | 55.24 | 79.12 |
| KRH15948 | Soybean | cytosol, nucleus | 68.03 | 78.93 |
| VIT_10s0003g04810.t01 | Wine grape | cytosol | 22.25 | 72.5 |
| KRH18113 | Soybean | plastid | 67.52 | 69.84 |
| Zm00001d012221_P001 | Maize | plastid | 67.77 | 69.74 |
| EES01858 | Sorghum | mitochondrion, plastid | 67.77 | 69.74 |
| PGSC0003DMT400079078 | Potato | cytoskeleton, peroxisome, plastid | 45.78 | 68.85 |
| Solyc06g059700.2.1 | Tomato | cytosol | 24.81 | 68.31 |
| GSMUA_Achr7P03060_001 | Banana | plastid | 54.99 | 68.25 |
| Os01t0880800-01 | Rice | plastid | 65.22 | 66.93 |
| TraesCS3D01G403800.1 | Wheat | plastid | 65.22 | 66.75 |
| TraesCS3A01G408700.1 | Wheat | mitochondrion, plastid | 64.45 | 66.67 |
| PGSC0003DMT400079076 | Potato | cytosol, peroxisome, plastid | 21.74 | 66.41 |
| HORVU3Hr1G091320.2 | Barley | plastid | 64.19 | 66.4 |
| PGSC0003DMT400013389 | Potato | cytosol | 43.48 | 65.64 |
| AT2G43710.1 | Thale cress | plastid | 64.19 | 62.59 |
| Solyc01g009960.2.1 | Tomato | plastid | 47.57 | 61.79 |
| PGSC0003DMT400095159 | Potato | plastid | 60.61 | 61.72 |
| AT3G02630.1 | Thale cress | plastid | 62.4 | 61.62 |
| AT5G16240.1 | Thale cress | plastid | 61.13 | 60.66 |
| KRH18114 | Soybean | cytosol | 58.06 | 60.53 |
| PGSC0003DMT400079075 | Potato | plastid | 60.1 | 60.26 |
| Solyc06g054670.1.1 | Tomato | plastid | 58.31 | 60.16 |
| PGSC0003DMT400079085 | Potato | plastid | 59.08 | 59.69 |
| Solyc06g059710.2.1 | Tomato | plastid | 58.82 | 59.43 |
| Solyc06g059720.2.1 | Tomato | plastid | 58.57 | 59.17 |
| AT5G16230.1 | Thale cress | plastid | 59.08 | 57.61 |
| AT3G02610.2 | Thale cress | plastid | 58.82 | 55.69 |
| AT3G02620.2 | Thale cress | plastid | 57.8 | 55.66 |
| VIT_07s0005g03820.t01 | Wine grape | nucleus, peroxisome, plastid | 35.55 | 52.06 |
| PGSC0003DMT400079080 | Potato | plastid | 26.6 | 47.27 |
Protein Annotations
| Gene3D:1.10.620.20 | MapMan:5.1.7.1 | EntrezGene:840977 | ProteinID:AAF63100.1 | ProteinID:AEE31998.1 | EMBL:AK227996 |
| ArrayExpress:AT1G43800 | EnsemblPlantsGene:AT1G43800 | RefSeq:AT1G43800 | TAIR:AT1G43800 | RefSeq:AT1G43800-TAIR-G | EnsemblPlants:AT1G43800.1 |
| TAIR:AT1G43800.1 | EMBL:AY085086 | Unigene:At.43113 | EMBL:BT004625 | ncoils:Coil | InterPro:FADS-2_CS |
| InterPro:Fatty_acid_desaturase-2 | InterPro:Ferritin-like_SF | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006633 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016491 | GO:GO:0045300 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0102786 |
| InterPro:IPR012348 | RefSeq:NP_175048.1 | PFAM:PF03405 | PIRSF:PIRSF000346 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0006016 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00574 | PANTHER:PTHR31155 | PANTHER:PTHR31155:SF3 |
| UniProt:Q84VY3 | InterPro:RNR-like | SUPFAM:SSF47240 | UniParc:UPI0000048344 | SEG:seg | : |
Description
S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
Coordinates
chr1:+:16577521..16579722
Molecular Weight (calculated)
44158.0 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.312
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.