Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008632.1-P | Field mustard | plastid | 91.52 | 91.07 |
| CDX69460 | Canola | plastid | 91.52 | 91.07 |
| CDY26509 | Canola | plastid | 90.77 | 90.32 |
| AT3G02610.2 | Thale cress | plastid | 85.54 | 83.05 |
| AT3G02620.2 | Thale cress | plastid | 81.05 | 80.05 |
| AT3G02630.1 | Thale cress | plastid | 64.34 | 65.15 |
| AT5G16240.1 | Thale cress | plastid | 63.09 | 64.21 |
| AT2G43710.1 | Thale cress | plastid | 64.09 | 64.09 |
| GSMUA_Achr6P01210_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 46.13 | 63.36 |
| AT1G43800.1 | Thale cress | plastid | 57.61 | 59.08 |
| HORVU7Hr1G040140.1 | Barley | cytosol, nucleus, peroxisome | 46.13 | 57.63 |
| GSMUA_Achr5P25190_001 | Banana | mitochondrion | 9.48 | 57.58 |
| Zm00001d030165_P001 | Maize | cytosol | 46.88 | 55.95 |
| PGSC0003DMT400041719 | Potato | cytosol, peroxisome, plastid | 19.45 | 53.42 |
| TraesCS2D01G074000.1 | Wheat | plastid | 51.12 | 50.62 |
| TraesCS2A01G075300.1 | Wheat | mitochondrion | 50.87 | 50.0 |
| TraesCS7B01G102300.1 | Wheat | plastid | 49.38 | 48.65 |
| TraesCS7A01G196500.1 | Wheat | plastid | 49.13 | 48.52 |
| HORVU2Hr1G012600.2 | Barley | mitochondrion | 48.88 | 48.51 |
| HORVU2Hr1G012780.1 | Barley | mitochondrion | 48.63 | 48.51 |
| Os08t0200100-01 | Rice | plastid | 48.38 | 48.02 |
| KXG38794 | Sorghum | plastid | 47.38 | 47.86 |
| TraesCS5B01G235800.1 | Wheat | plastid | 47.13 | 47.01 |
| Zm00001d024273_P001 | Maize | plastid | 49.38 | 46.7 |
| TraesCS5A01G236800.1 | Wheat | plastid | 46.88 | 46.53 |
| KXG24679 | Sorghum | plastid | 48.88 | 46.34 |
| Zm00001d014498_P001 | Maize | plastid | 47.13 | 46.32 |
| TraesCS5A01G237000.1 | Wheat | plastid | 46.63 | 46.29 |
| TraesCS5B01G235900.1 | Wheat | plastid | 46.88 | 46.19 |
| TraesCS5D01G244700.1 | Wheat | plastid | 46.88 | 46.19 |
| TraesCS5A01G237800.1 | Wheat | plastid | 46.63 | 45.95 |
| Os03t0423300-01 | Rice | plastid | 47.88 | 45.93 |
| EER88838 | Sorghum | plastid | 46.88 | 45.85 |
| TraesCS3D01G413500.1 | Wheat | plastid | 47.63 | 45.69 |
| HORVU2Hr1G006990.1 | Barley | plastid | 46.38 | 45.48 |
| TraesCS3A01G418000.1 | Wheat | plastid | 47.38 | 45.35 |
| TraesCS2A01G075500.1 | Wheat | plastid | 50.12 | 45.17 |
| TraesCS2B01G090400.1 | Wheat | mitochondrion | 50.62 | 45.11 |
| TraesCS3B01G453200.2 | Wheat | mitochondrion, plastid | 47.13 | 45.11 |
| TraesCS2D01G074200.1 | Wheat | mitochondrion, plastid | 50.12 | 44.77 |
| Zm00001d021059_P001 | Maize | plastid | 45.64 | 44.74 |
| HORVU5Hr1G068310.1 | Barley | plastid | 47.38 | 44.39 |
| KXG35977 | Sorghum | plastid | 45.64 | 44.2 |
| TraesCS2D01G074100.1 | Wheat | mitochondrion | 49.88 | 43.86 |
| TraesCS2A01G075400.1 | Wheat | mitochondrion | 49.38 | 43.42 |
| HORVU3Hr1G061520.7 | Barley | cytosol, peroxisome | 46.88 | 43.12 |
| TraesCS2B01G090700.1 | Wheat | plastid | 42.39 | 42.82 |
| HORVU3Hr1G092740.3 | Barley | cytosol, peroxisome | 46.88 | 42.73 |
| Os08t0199400-01 | Rice | plastid | 44.39 | 42.48 |
| EER91728 | Sorghum | mitochondrion, plastid | 45.39 | 42.42 |
| OQU92381 | Sorghum | plastid | 47.13 | 42.09 |
| Zm00001d030328_P001 | Maize | mitochondrion | 44.89 | 41.47 |
| Os03t0741000-00 | Rice | plastid | 25.19 | 33.67 |
| Os06t0503800-00 | Rice | plastid | 19.45 | 31.97 |
Protein Annotations
| Gene3D:1.10.620.20 | MapMan:5.1.7.1 | EntrezGene:831483 | ProteinID:AED92263.1 | ProteinID:ANM70832.1 | ArrayExpress:AT5G16230 |
| EnsemblPlantsGene:AT5G16230 | RefSeq:AT5G16230 | TAIR:AT5G16230 | RefSeq:AT5G16230-TAIR-G | EnsemblPlants:AT5G16230.1 | TAIR:AT5G16230.1 |
| EMBL:BT029294 | ProteinID:CAC01864.1 | InterPro:Fatty_acid_desaturase-2 | InterPro:Ferritin-like_SF | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006633 | GO:GO:0006636 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009791 | GO:GO:0009960 |
| GO:GO:0009987 | GO:GO:0016491 | GO:GO:0045300 | GO:GO:0046872 | GO:GO:0055089 | GO:GO:0055114 |
| GO:GO:0102786 | GO:GO:2000014 | InterPro:IPR012348 | RefSeq:NP_001332411.1 | RefSeq:NP_197127.1 | PFAM:PF03405 |
| PIRSF:PIRSF000346 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR31155 | PANTHER:PTHR31155:SF6 | UniProt:Q9LF05 | InterPro:RNR-like | SUPFAM:SSF47240 |
| UniParc:UPI0000048B4F | SEG:seg | : | : | : | : |
Description
S-ACP-DES3Stearoyl-[acyl-carrier-protein] 9-desaturase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF05]
Coordinates
chr5:+:5302905..5306088
Molecular Weight (calculated)
45862.8 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.510
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMALLLTSP AMKQKPAVIT SPRRGSSPSR RLRVSCVTTN PARKKNETCN HFRPIKEVNN QLTHTIPQEK LEIFKSMENW AEQKLLPYLK PVEDSWQPQD
101: FLPAPENDDE FYDRVKEIRE RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLSPWAVW IRAWTAEENR HGDLLNKYLY LTGRVDMRHV
201: EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN TARLATTYGD VTLAKICGTI AADEKRHETA YTKIVEKLFE IDPDGSVQAL ASMMKKRITM
301: PAHLMHDGRD NDLFDHYAAV AQRIGVYTAA DYAGILEFLL RRWKVESLGL GLSGEGRRAQ EYLCTLPQRI KRLEERANDR VKLVSKPSVS FSWVFGRDVK
401: L
101: FLPAPENDDE FYDRVKEIRE RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLSPWAVW IRAWTAEENR HGDLLNKYLY LTGRVDMRHV
201: EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN TARLATTYGD VTLAKICGTI AADEKRHETA YTKIVEKLFE IDPDGSVQAL ASMMKKRITM
301: PAHLMHDGRD NDLFDHYAAV AQRIGVYTAA DYAGILEFLL RRWKVESLGL GLSGEGRRAQ EYLCTLPQRI KRLEERANDR VKLVSKPSVS FSWVFGRDVK
401: L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.