Factsheet for TraesCS3A01G418000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	93.79	93.79
TraesCS3D01G413500.1	Wheat	plastid	93.32	93.54
HORVU3Hr1G061520.7	Barley	cytosol, peroxisome	84.73	81.42
HORVU3Hr1G092740.3	Barley	cytosol, peroxisome	84.96	80.91
Os03t0423300-01	Rice	plastid	71.84	72.01
OQU92381	Sorghum	plastid	68.74	64.14
TraesCS5A01G237800.1	Wheat	plastid	59.9	61.67
TraesCS5A01G237000.1	Wheat	plastid	59.43	61.63
TraesCS5A01G236800.1	Wheat	plastid	59.43	61.63
TraesCS7A01G196500.1	Wheat	plastid	51.07	52.71
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	47.26	52.38
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.28	52.05
GSMUA_Achr5P25190_001	Banana	mitochondrion	8.11	51.52
TraesCS5A01G123600.2	Wheat	plastid	47.26	51.43
TraesCS2A01G075300.1	Wheat	mitochondrion	48.93	50.25
TraesCS2A01G280700.2	Wheat	plastid	46.54	49.74
AT5G16230.1	Thale cress	plastid	45.35	47.38
TraesCS4A01G326700.1	Wheat	plastid	46.06	47.19
CDY26509	Canola	plastid	45.35	47.15
CDX69460	Canola	plastid	45.35	47.15
Bra008632.1-P	Field mustard	plastid	45.35	47.15
AT3G02620.2	Thale cress	plastid	45.35	46.8
Bra039178.1-P	Field mustard	plastid	43.91	46.58
AT3G02610.2	Thale cress	plastid	45.35	46.0
TraesCS2A01G075500.1	Wheat	plastid	48.45	45.62
CDY57537	Canola	plastid	44.39	45.48
CDY43232	Canola	plastid	44.15	45.23
TraesCS2A01G075400.1	Wheat	mitochondrion	47.97	44.08
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	14.8	42.47
TraesCS3A01G426800.3	Wheat	plastid	45.82	39.83

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF14	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS3A01G418000	EnsemblPlants:TraesCS3A01G418000.1	TIGR:cd01050
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:660053341..660054799

Molecular Weight (calculated)

46011.0 Da

IEP (calculated)

7.563

GRAVY (calculated)

-0.217

Length

419 amino acids

Sequence
(BLAST)

001: MAKLGLAVGT STKFSCFFFS DKSNAGSGRA TRLGWILCPA NPRCRLARRW TAAAAVEAPP RSIDMGCAPV PREQAEIVQS LNGWVAENML PLLNPVESSW
101: QPHDFMPCSA ATPGASEEEA LSAFMDGVAA LRAGAARVPD EVLVCLVGNM VTEEALPSYQ SMGNRTEGIA DDTGASSLPW AQWIRGWTAE ENRHGDLLNR
201: YLYLSGRVDM RQVETTVHHL LRNGMEMLVP KSPYHSVIYG AFQERATFVS HVHTARLAGQ HGDQALAKIC GVIAADEKRH EAGYTRVCAK LFELDPDGMV
301: RALAHVMRGK VTMPGLLMSD GRDAASGENS LFERFSAVAQ SAGVYTARDY GDLVEHFVRR WRVAELAGLS GEGRRAQEYV CGLPPKIRRM EELAHQRAAR
401: SELRPARFSW IFDRHVTVG

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.