CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008632.1-P	Field mustard	plastid	100.0	100.0
CDY26509	Canola	plastid	99.26	99.26
AT5G16230.1	Thale cress	plastid	91.07	91.52
CDY57537	Canola	plastid	80.4	79.22
CDY43232	Canola	plastid	80.15	78.97
CDY34739	Canola	plastid	45.16	66.91
CDX92006	Canola	plastid	65.01	66.16
CDX83464	Canola	plastid	64.76	65.58
CDY26510	Canola	plastid	64.52	65.49
CDX69459	Canola	plastid	64.52	65.49
CDX74242	Canola	plastid	64.27	65.4
CDY44250	Canola	plastid	64.27	64.91
CDX79807	Canola	plastid	64.52	64.84
CDY17916	Canola	plastid	63.77	64.41
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	45.66	63.01
HORVU7Hr1G040140.1	Barley	cytosol, nucleus, peroxisome	45.91	57.63
Zm00001d030165_P001	Maize	cytosol	47.15	56.55
GSMUA_Achr5P25190_001	Banana	mitochondrion	9.18	56.06
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	19.11	52.74
TraesCS2D01G074000.1	Wheat	plastid	50.62	50.37
TraesCS2A01G075300.1	Wheat	mitochondrion	50.37	49.75
TraesCS7B01G102300.1	Wheat	plastid	49.13	48.65
TraesCS7A01G196500.1	Wheat	plastid	48.88	48.52
HORVU2Hr1G012600.2	Barley	mitochondrion	48.39	48.27
HORVU2Hr1G012780.1	Barley	mitochondrion	48.14	48.26
Os08t0200100-01	Rice	plastid	48.14	48.02
KXG38794	Sorghum	plastid	46.9	47.61
TraesCS5B01G235800.1	Wheat	plastid	47.39	47.51
Zm00001d014498_P001	Maize	plastid	47.89	47.3
Zm00001d024273_P001	Maize	plastid	49.38	46.93
TraesCS5A01G237000.1	Wheat	plastid	46.9	46.78
TraesCS5A01G236800.1	Wheat	plastid	46.9	46.78
EER88838	Sorghum	plastid	47.39	46.59
TraesCS5D01G244700.1	Wheat	plastid	46.9	46.44
TraesCS5B01G235900.1	Wheat	plastid	46.9	46.44
Os03t0423300-01	Rice	plastid	47.89	46.17
Zm00001d021059_P001	Maize	plastid	46.65	45.97
TraesCS5A01G237800.1	Wheat	plastid	46.4	45.95
KXG24679	Sorghum	plastid	48.14	45.86
TraesCS3D01G413500.1	Wheat	plastid	47.15	45.45
TraesCS3A01G418000.1	Wheat	plastid	47.15	45.35
HORVU2Hr1G006990.1	Barley	plastid	45.91	45.23
KXG35977	Sorghum	plastid	46.4	45.17
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	46.9	45.11
HORVU5Hr1G068310.1	Barley	plastid	47.64	44.86
TraesCS2A01G075500.1	Wheat	plastid	49.38	44.72
TraesCS2B01G090400.1	Wheat	mitochondrion	49.63	44.44
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	48.88	43.88
TraesCS2D01G074100.1	Wheat	mitochondrion	49.13	43.42
HORVU3Hr1G061520.7	Barley	cytosol, peroxisome	46.65	43.12
TraesCS2A01G075400.1	Wheat	mitochondrion	48.64	42.98
HORVU3Hr1G092740.3	Barley	cytosol, peroxisome	46.65	42.73
Os08t0199400-01	Rice	plastid	44.17	42.48
TraesCS2B01G090700.1	Wheat	plastid	41.69	42.32
EER91728	Sorghum	mitochondrion, plastid	44.91	42.19
OQU92381	Sorghum	plastid	46.9	42.09
Zm00001d030328_P001	Maize	mitochondrion	44.91	41.71
Os03t0741000-00	Rice	plastid	25.06	33.67
Os06t0503800-00	Rice	plastid	19.85	32.79

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	GO:A0A078BXE6	EnsemblPlants:CDX69460	ProteinID:CDX69460	ProteinID:CDX69460.1
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0006631
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00135440001	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6
InterPro:RNR-like	SUPFAM:SSF47240	UniPathway:UPA00199	UniParc:UPI0002544A5E	SEG:seg	:

Description

BnaA10g18090D

Coordinates

chrLK031790:-:339777..342594

Molecular Weight (calculated)

45797.3 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.474

Length

403 amino acids

Sequence
(BLAST)

001: MSIALLLPSP VMTQKPSSIT SPPRGFGSSS SRLLQVSCVT KNPARNNNVT CNNFRPIKEV NNQITHTIPQ EKLEIFKSME NWAETTLLPY LKPVEDSWQP
101: QDFLPAPETD DAFYDQVREI RERTKEIPDD YFVVLVGDMI TEEALPTYQT TLNTLDGVKD ETGGSLSPWA VWIRAWTAEE NRHGDLLNKY LYLCGRVDMR
201: HVERTIQYLI GSGMDSKFEN NPYNGFIYTS FQERATFISH GNTARLATTY GDTTLAKICG TIAADEKRHE TAYTKIVEKL FELDPDGTVQ ALASMMKKRI
301: TMPAHLMHDG RDDQLFDHYA AVAQRIGVYT AADYAGILEF LLRRWKVESL GSGLSGEGRR AQEYLCTLPQ RIKRLEERAN DRVKRQSKGS VSFSWVFGRD
401: VEL

Best Arabidopsis Sequence Match ( AT5G16230.1 )
(BLAST)

001: MSMALLLTSP AMKQKPAVIT SPRRGSSPSR RLRVSCVTTN PARKKNETCN HFRPIKEVNN QLTHTIPQEK LEIFKSMENW AEQKLLPYLK PVEDSWQPQD
101: FLPAPENDDE FYDRVKEIRE RTKEIPDDYF VVLVGDMITE EALPTYQTTL NTLDGVKDET GGSLSPWAVW IRAWTAEENR HGDLLNKYLY LTGRVDMRHV
201: EKTIQYLIGS GMDSKFENNP YNGFIYTSFQ ERATFISHGN TARLATTYGD VTLAKICGTI AADEKRHETA YTKIVEKLFE IDPDGSVQAL ASMMKKRITM
301: PAHLMHDGRD NDLFDHYAAV AQRIGVYTAA DYAGILEFLL RRWKVESLGL GLSGEGRRAQ EYLCTLPQRI KRLEERANDR VKLVSKPSVS FSWVFGRDVK
401: L

Arabidopsis Description

S-ACP-DES3Stearoyl-[acyl-carrier-protein] 9-desaturase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.