CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
vacuole 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030328_P001	Maize	mitochondrion	88.58	87.56
Os08t0199400-01	Rice	plastid	66.43	68.02
KXG24679	Sorghum	plastid	62.24	63.12
TraesCS2D01G074000.1	Wheat	plastid	55.71	59.01
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	56.18	53.67
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.36	53.42
TraesCS2D01G074100.1	Wheat	mitochondrion	55.48	52.19
EES01858	Sorghum	mitochondrion, plastid	42.89	48.42
KXG38794	Sorghum	plastid	44.52	48.11
EER88838	Sorghum	plastid	44.52	46.59
EES10606	Sorghum	plastid	42.42	46.43
KXG35977	Sorghum	plastid	44.29	45.89
AT5G16230.1	Thale cress	plastid	42.42	45.39
Bra039178.1-P	Field mustard	plastid	41.72	45.32
CDX69460	Canola	plastid	42.19	44.91
Bra008632.1-P	Field mustard	plastid	42.19	44.91
CDY26509	Canola	plastid	42.19	44.91
AT3G02610.2	Thale cress	plastid	43.12	44.79
CDY57537	Canola	plastid	42.66	44.74
KXG30261	Sorghum	plastid	43.36	44.71
OQU92381	Sorghum	plastid	46.39	44.32
CDY43232	Canola	plastid	42.19	44.25
AT3G02620.2	Thale cress	plastid	41.26	43.6
EES04113	Sorghum	plastid	40.33	43.58
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	13.52	39.73
GSMUA_Achr5P25190_001	Banana	mitochondrion	6.06	39.39
OQU85014	Sorghum	plastid, vacuole	24.24	27.59

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	EntrezGene:8083838	UniProt:C5WP02	EnsemblPlants:EER91728	ProteinID:EER91728
ProteinID:EER91728.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346
PANTHER:PTHR31155	PANTHER:PTHR31155:SF15	InterPro:RNR-like	EnsemblPlantsGene:SORBI_3001G265300	SUPFAM:SSF47240	UniParc:UPI0001A821B9
RefSeq:XP_002464730.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:49923793..49925809

Molecular Weight (calculated)

47462.8 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.265

Length

429 amino acids

Sequence
(BLAST)

001: MTMASAFYRF GYLSCKPSVP GTCKPAAAGR GNGGIHHALA ITRSNWRCRN MATASGETTV APAGRRREKK DVVEGEEEWR SYLAPQKLEV LRQLEPWVEE
101: HVLPLLKPVE ASWQPSDLLP DPAALGSDGF QAACLELRAA AAGVPDDLLV CLVANMVTEE ALPTYPSGLN RLEVVRDATG ADATAWARWI RGWSAEENRH
201: GDVLNRYMHL SGRFDMREVE RTVQRLIRDG MVVHAPASPF HGFVYVAFQE RATAIAHGNT ARLVGARGAG DAALARICGT VAADEKRHEA AYTRVVAKLF
301: EADPDAAMRA VAYVMRRRID MPTAFINDGR HSGGDFYARF IAIAEQAGTY TVSDYRGILE HLIRQWGVEE LAAGLTGDGR RARDYLCALP YKIKRMEEKA
401: HDRAVKAQKK PTRIPINWIF DRTITVILP

Best Arabidopsis Sequence Match ( AT3G02610.1 )
(BLAST)

001: MALLLNSTIT VAMKQNPLVA VSFPRTTCLG SSFSPPRLLR VSCVATNPSK TSEETDKKKF RPIKEVPNQV THTITQEKLE IFKSMENWAQ ENLLSYLKPV
101: EASWQPQDFL PETNDEDRFY EQVKELRDRT KEIPDDYFVV LVGDMITEEA LPTYQTTLNT LDGVKDETGG SLTPWAVWVR AWTAEENRHG DLLNKYLYLS
201: GRVDMRHVEK TIQYLIGSGM DSKFENNPYN GFIYTSFQER ATFISHGNTA KLATTYGDTT LAKICGTIAA DEKRHETAYT RIVEKLFEID PDGTVQALAS
301: MMRKRITMPA HLMHDGRDDD LFDHYAAVAQ RIGVYTATDY AGILEFLLRR WEVEKLGMGL SGEGRRAQDY LCTLPQRIRR LEERANDRVK LASKSKPSVS
401: FSWIYGREVE L

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.