Factsheet for GSMUA_Achr5P25190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 1
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	83.33	33.54
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	65.15	27.22
GSMUA_Achr5P25160_001	Banana	plastid	96.97	16.24
GSMUA_Achr8P32640_001	Banana	cytosol	59.09	14.29
GSMUA_Achr7P22860_001	Banana	plastid	75.76	13.85
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	57.58	13.01
GSMUA_Achr8P08750_001	Banana	plastid	68.18	12.75
HORVU7Hr1G040140.1	Barley	cytosol, nucleus, peroxisome	54.55	11.21
AT3G02610.2	Thale cress	plastid	68.18	10.9
AT3G02620.2	Thale cress	plastid	66.67	10.84
GSMUA_Achr7P03060_001	Banana	plastid	51.52	10.79
Bra039178.1-P	Field mustard	plastid	60.61	10.13
CDY57537	Canola	plastid	60.61	9.78
CDY43232	Canola	plastid	60.61	9.78
AT5G16230.1	Thale cress	plastid	57.58	9.48
Os08t0200100-01	Rice	plastid	57.58	9.41
Zm00001d030165_P001	Maize	cytosol	46.97	9.23
CDY26509	Canola	plastid	56.06	9.18
CDX69460	Canola	plastid	56.06	9.18
Bra008632.1-P	Field mustard	plastid	56.06	9.18
TraesCS2D01G074000.1	Wheat	plastid	56.06	9.14
TraesCS7B01G102300.1	Wheat	plastid	56.06	9.09
KXG24679	Sorghum	plastid	57.58	8.98
Zm00001d024273_P001	Maize	plastid	57.58	8.96
TraesCS7A01G196500.1	Wheat	plastid	54.55	8.87
EER88838	Sorghum	plastid	54.55	8.78
Zm00001d014498_P001	Maize	plastid	53.03	8.58
TraesCS2A01G075300.1	Wheat	mitochondrion	53.03	8.58
HORVU2Hr1G006990.1	Barley	plastid	53.03	8.56
HORVU2Hr1G012780.1	Barley	mitochondrion	51.52	8.46
Os03t0423300-01	Rice	plastid	53.03	8.37
Zm00001d021059_P001	Maize	plastid	51.52	8.31
KXG35977	Sorghum	plastid	51.52	8.21
TraesCS5B01G235800.1	Wheat	plastid	50.0	8.21
TraesCS5A01G237000.1	Wheat	plastid	50.0	8.17
TraesCS3D01G413500.1	Wheat	plastid	51.52	8.13
TraesCS3B01G453200.2	Wheat	mitochondrion, plastid	51.52	8.11
TraesCS3A01G418000.1	Wheat	plastid	51.52	8.11
TraesCS5B01G235900.1	Wheat	plastid	50.0	8.11
TraesCS5A01G237800.1	Wheat	plastid	50.0	8.11
TraesCS2A01G075500.1	Wheat	plastid	54.55	8.09
TraesCS5A01G236800.1	Wheat	plastid	48.48	7.92
HORVU2Hr1G012600.2	Barley	mitochondrion	48.48	7.92
OQU92381	Sorghum	plastid	53.03	7.8
TraesCS5D01G244700.1	Wheat	plastid	46.97	7.62
HORVU3Hr1G061520.7	Barley	cytosol, peroxisome	50.0	7.57
TraesCS2B01G090700.1	Wheat	plastid	45.45	7.56
KXG38794	Sorghum	plastid	45.45	7.56
HORVU3Hr1G092740.3	Barley	cytosol, peroxisome	50.0	7.5
HORVU5Hr1G068310.1	Barley	plastid	48.48	7.48
TraesCS2B01G090400.1	Wheat	mitochondrion	50.0	7.33
TraesCS2D01G074100.1	Wheat	mitochondrion	50.0	7.24
Os08t0199400-01	Rice	plastid	45.45	7.16
TraesCS2D01G074200.1	Wheat	mitochondrion, plastid	48.48	7.13
TraesCS2A01G075400.1	Wheat	mitochondrion	46.97	6.8
Zm00001d030328_P001	Maize	mitochondrion	43.94	6.68
EER91728	Sorghum	mitochondrion, plastid	39.39	6.06
Os06t0503800-00	Rice	plastid	12.12	3.28
Os03t0741000-00	Rice	plastid	13.64	3.0
GSMUA_Achr5P25180_001	Banana	cytosol	6.06	2.42
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G25190_001	EnsemblPlants:GSMUA_Achr5P25190_001	EnsemblPlants:GSMUA_Achr5T25190_001	InterPro:IPR012348
UniProt:M0T1J4	PFAM:PF03405	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI0002950F49	:	:	:	:	:

Description

Putative Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G25190_001]

Coordinates

chr5:+:26294943..26295263

Molecular Weight (calculated)

7451.2 Da

IEP (calculated)

10.567

GRAVY (calculated)

-0.498

Length

66 amino acids

Sequence
(BLAST)

1: MMRKKITMPA HLMCDGPGLS GEGNKAQDFV CTLASKIRQL DERARGRAKK APAMPFSWIY NREVQL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.