Factsheet for TraesCS2A01G075300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G074000.1	Wheat	plastid	94.12	94.81
TraesCS2A01G075500.1	Wheat	plastid	85.54	78.43
TraesCS2A01G075400.1	Wheat	mitochondrion	83.58	74.78
HORVU2Hr1G006990.1	Barley	plastid	71.57	71.39
TraesCS7A01G196500.1	Wheat	plastid	66.67	67.0
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	43.38	60.62
TraesCS2A01G280700.2	Wheat	plastid	51.23	53.32
GSMUA_Achr5P25190_001	Banana	mitochondrion	8.58	53.03
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	48.53	52.38
TraesCS5A01G123600.2	Wheat	plastid	48.53	51.43
Bra039178.1-P	Field mustard	plastid	49.75	51.39
AT5G16230.1	Thale cress	plastid	50.0	50.87
AT3G02610.2	Thale cress	plastid	51.47	50.85
Bra008632.1-P	Field mustard	plastid	49.75	50.37
CDY26509	Canola	plastid	49.75	50.37
CDX69460	Canola	plastid	49.75	50.37
CDY57537	Canola	plastid	50.0	49.88
AT3G02620.2	Thale cress	plastid	49.51	49.75
CDY43232	Canola	plastid	49.75	49.63
TraesCS5A01G237800.1	Wheat	plastid	49.26	49.39
TraesCS3A01G418000.1	Wheat	plastid	50.25	48.93
TraesCS5A01G237000.1	Wheat	plastid	48.28	48.76
TraesCS4A01G326700.1	Wheat	plastid	48.77	48.66
TraesCS5A01G236800.1	Wheat	plastid	47.79	48.27
TraesCS3A01G426800.3	Wheat	plastid	50.74	42.95
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	14.95	41.78

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF10	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:TraesCS2A01G075300	EnsemblPlants:TraesCS2A01G075300.1	TIGR:cd01050
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:33342883..33344221

Molecular Weight (calculated)

45723.5 Da

IEP (calculated)

7.945

GRAVY (calculated)

-0.312

Length

408 amino acids

Sequence
(BLAST)

001: MAASWLLKHP CPPARPWTRT RNATGLRLQQ VTTITYRRTT CTGRSAAVAV KHEEEGADEE WLAYLDPAKL EVFDQLEPWA EANVVPLLKP AEVAWQPTDL
101: LPDPASLGAD GFHAACRDLR ARAAGLPDAH LVCLVGNMVT EEALPSYQSM ANRFQAVHDL TGSSGTAWAR WTRGWSAEEN RHGDVLNRYL YLSGRVDMRQ
201: VERTIHNLIR SGMVLNAARS PYHGFIYVAF QERATFISHG NTARRAKEHG DVALARICGA IAADEKRHEL AYTRIVAKLF EIDPDGAVRA LAYMMRRRIV
301: MPASLMTDGR DDDLFAHYGA VAHQVGIYTA SDYRGILEHL IKQWGVEELV AAGLSDEGRR ARDYVCALPQ NIRRLEEKAH ERSRHKAHPM TSIPFSWIFD
401: RPVSITVA

Best Arabidopsis Sequence Match ( AT3G02610.1 )
(BLAST)

001: MALLLNSTIT VAMKQNPLVA VSFPRTTCLG SSFSPPRLLR VSCVATNPSK TSEETDKKKF RPIKEVPNQV THTITQEKLE IFKSMENWAQ ENLLSYLKPV
101: EASWQPQDFL PETNDEDRFY EQVKELRDRT KEIPDDYFVV LVGDMITEEA LPTYQTTLNT LDGVKDETGG SLTPWAVWVR AWTAEENRHG DLLNKYLYLS
201: GRVDMRHVEK TIQYLIGSGM DSKFENNPYN GFIYTSFQER ATFISHGNTA KLATTYGDTT LAKICGTIAA DEKRHETAYT RIVEKLFEID PDGTVQALAS
301: MMRKRITMPA HLMHDGRDDD LFDHYAAVAQ RIGVYTATDY AGILEFLLRR WEVEKLGMGL SGEGRRAQDY LCTLPQRIRR LEERANDRVK LASKSKPSVS
401: FSWIYGREVE L

Arabidopsis Description

Plant stearoyl-acyl-carrier desaturase family protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7P2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.