Factsheet for AT5G16240.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69459	Canola	plastid	87.31	86.65
CDY26510	Canola	plastid	87.31	86.65
Bra008631.1-P	Field mustard	plastid	87.06	86.4
AT3G02630.1	Thale cress	plastid	86.29	85.86
VIT_05s0094g00550.t01	Wine grape	cytosol	51.02	77.01
VIT_05s0094g00730.t01	Wine grape	plastid	65.99	71.82
AT2G43710.1	Thale cress	plastid	72.59	71.32
VIT_05s0094g00580.t01	Wine grape	plastid	64.47	70.17
VIT_05s0094g00740.t01	Wine grape	plastid	58.38	64.43
AT3G02610.2	Thale cress	plastid	66.24	63.2
AT5G16230.1	Thale cress	plastid	64.21	63.09
AT3G02620.2	Thale cress	plastid	64.97	63.05
AT1G43800.1	Thale cress	plastid	60.66	61.13
VIT_05s0094g00650.t01	Wine grape	plastid	59.14	57.82
GSMUA_Achr5P25180_001	Banana	cytosol	20.81	49.7
VIT_05s0094g00630.t01	Wine grape	plastid	19.8	46.43

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	EntrezGene:831484	ProteinID:AED92264.1	ArrayExpress:AT5G16240	EnsemblPlantsGene:AT5G16240
RefSeq:AT5G16240	TAIR:AT5G16240	RefSeq:AT5G16240-TAIR-G	EnsemblPlants:AT5G16240.1	TAIR:AT5G16240.1	EMBL:AY056428
EMBL:AY088096	EMBL:AY090324	Unigene:At.26326	ProteinID:CAC01865.1	ncoils:Coil	InterPro:Fatty_acid_desaturase-2
InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	GO:GO:0102786	InterPro:IPR012348	RefSeq:NP_197128.1
PFAM:PF03405	PIRSF:PIRSF000346	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	UniProt:Q9LF04
InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI0000048B50	SEG:seg	:	:

Description

S-ACP-DES1Stearoyl-[acyl-carrier-protein] 9-desaturase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF04]

Coordinates

chr5:+:5306740..5309961

Molecular Weight (calculated)

45020.5 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.501

Length

394 amino acids

Sequence
(BLAST)

001: MVMAMDRIAL FSSSSSVYHH GSSHSHGSKS SRVFTIRSDS TAVGRKLYIP PREVHLQVKY SMPPQKLEIF KSLEGWANDN LLAYLKPVEK SWQPTDFLPE
101: PESEGFYDQV KELRERCKEL SDDYLIVLVG DMITEEALPT YQTMINTLDG VRDETGASPT PWAVWTRAWT AEENRHGDLL NKYLYLSGRV DMRQIEKTIQ
201: YLIGSGMDPK TENNPYLGFI YTSFQERATF ISHGNTARLA KDLGDLTLGK ICGTIAADER RHEHAYTKIV EKLFEIDPDT TVVGFADMMR KKISMPAHLM
301: YDGRDDNLFD HFSSVAQRLG VYTAKDYADI LQHLVERWNV EKLSDLSSEG NRAQDYLCGL PARIRKLEER AQGRTKEAAK NIPFSWIFGR EVRA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.