Factsheet for Solyc06g059700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g04810.t01	Wine grape	cytosol	38.03	45.0
PGSC0003DMT400079080	Potato	plastid	69.72	45.0
Solyc01g009960.2.1	Tomato	plastid	73.94	34.88
Solyc06g054670.1.1	Tomato	plastid	92.96	34.83
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	61.97	32.96
Solyc06g059720.2.1	Tomato	plastid	85.92	31.52
Solyc06g059710.2.1	Tomato	plastid	85.92	31.52
GSMUA_Achr8P32640_001	Banana	cytosol	59.86	31.14
KRH15948	Soybean	cytosol, nucleus	71.13	29.97
GSMUA_Achr7P03060_001	Banana	plastid	59.86	26.98
EES01858	Sorghum	mitochondrion, plastid	71.13	26.58
Zm00001d012221_P001	Maize	plastid	70.42	26.32
VIT_18s0001g15460.t01	Wine grape	plastid	71.13	25.96
KRH18113	Soybean	plastid	69.01	25.93
Os01t0880800-01	Rice	plastid	69.01	25.72
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	68.31	25.66
HORVU3Hr1G091320.2	Barley	plastid	68.31	25.66
TraesCS3D01G403800.1	Wheat	plastid	69.01	25.65
AT1G43800.1	Thale cress	plastid	68.31	24.81
KRH18114	Soybean	cytosol	63.38	24.0
Solyc03g063110.2.1	Tomato	plastid	66.2	23.92
Solyc11g008680.1.1	Tomato	plastid	66.2	23.92
Solyc06g053480.2.1	Tomato	plastid	65.49	23.43
Solyc06g034170.1.1	Tomato	peroxisome, plastid	2.11	2.78

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	InterPro:IPR012348	UniProt:K4C6F7	PFAM:PF03405	PANTHER:PTHR31155
PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:Solyc06g059700.2	EnsemblPlants:Solyc06g059700.2.1	UniParc:UPI0002765D78

Description

No Description!

Coordinates

chr6:+:37554346..37556801

Molecular Weight (calculated)

16333.6 Da

IEP (calculated)

4.404

GRAVY (calculated)

-0.302

Length

142 amino acids

Sequence
(BLAST)

001: MPPEKLEIFK SLEPWVSENV LPFLKPVEKC RQPIEFLPDP SQGPEQFEEE VRAIRHRASG LSDEYFVMLV DGVGDETGCS PCPWAIWTRA WTAEENRHGD
101: LLRTYLYLSG RVDMLMVDKT LQYLIGAGMD IRLENNPYLG FV

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.